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| Status |
Public on Dec 17, 2022 |
| Title |
Transcriptome profiling of wildtype C57BL/6 female mice during estrous cycle(mainly in estrus and diestrus). |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Background:The morphology of vaginal secretions during estrus and diestrus is characteristic and easy to distinguish. There are also significant differences in hormone levels between the two periods in physiological condition. However, the gene changes during estrus cycle especially the two periods are still unclear. Therefore, this study plans to find out the pathway changes related to the estrus cycle of female mice, the expression of various proteins, predict the genes sensitive to hormone changes in vivo through gene analysis of 15 tissues in the two periods and construct of differential gene expression library.
Methods:The wildtype healthy female mice in estrus were compared with those in diestrus. The transcriptome changes between the two periods were probed by using high-throughput RNA-seq techniques.
Results:A comprehensive mouse transcriptome map in estrus or diestrus across fifteen tissues including aorta, vein, brown adipose tissue, white adipose tissue, heart, kidney, liver, skeletal muscle, stomach, duodenum, cerebrum, hypothalamus, ovary, womb and spleen were provided.
Conclusions:This dataset could serve as a baseline resource for investigating the potential gene changes sensitive to the estrus cycle across different tissues and provide the information for screening the key functional genes or molecular markers of estrus cycle.
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| Overall design |
Wildtype healthy C57BL/6 female mice in estrus or diestrus (Detection of aginal secretion smear). The mRNA profiles across 15 tissues (including aorta, vein, brown adipose tissue, white adipose tissue, heart, kidney, liver, skeletal muscle, stomach, duodenum, cerebrum, hypothalamus, ovary, womb and spleen) were generated through RNA-seq technique, in triplicate for each group, using BGISEQ-500.
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| Contributor(s) |
Yang J, Cui Q |
| Citation(s) |
36589755 |
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| Submission date |
May 14, 2019 |
| Last update date |
Jan 11, 2023 |
| Contact name |
Yiran Zhou |
| E-mail(s) |
[email protected]
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| Organization name |
Peking University
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| Street address |
38 Xueyuan Rd
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| City |
Beijing |
| ZIP/Postal code |
100191 |
| Country |
China |
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| Platforms (1) |
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| Samples (90)
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| GSM3765050 |
aorta_B1: Aorta, diestrus, rep 1 |
| GSM3765051 |
aorta_B2: Aorta, diestrus, rep 2 |
| GSM3765052 |
aorta_B3: Aorta, diestrus, rep 3 |
| GSM3765053 |
BAT_A1: Brown adipose tissue, estrus, rep 1 |
| GSM3765054 |
BAT_A2: Brown adipose tissue, estrus, rep 2 |
| GSM3765055 |
BAT_A3: Brown adipose tissue, estrus, rep 3 |
| GSM3765056 |
BAT_B1: Brown adipose tissue, diestrus, rep 1 |
| GSM3765057 |
BAT_B2: Brown adipose tissue, diestrus, rep 2 |
| GSM3765058 |
BAT_B3: Brown adipose tissue, diestrus, rep 3 |
| GSM3765059 |
cerebrum_A1: Cerebrum, estrus, rep 1 |
| GSM3765060 |
cerebrum_A2: Cerebrum, estrus, rep 2 |
| GSM3765061 |
cerebrum_A3: Cerebrum, estrus, rep 3 |
| GSM3765062 |
cerebrum_B1: Cerebrum, diestrus, rep 1 |
| GSM3765063 |
cerebrum_B2: Cerebrum, diestrus, rep 2 |
| GSM3765064 |
cerebrum_B3: Cerebrum, diestrus, rep 3 |
| GSM3765065 |
duo_A1: Duodenum, estrus, rep 1 |
| GSM3765066 |
duo_A2: Duodenum, estrus, rep 2 |
| GSM3765067 |
duo_A3: Duodenum, estrus, rep 3 |
| GSM3765068 |
duo_B1: Duodenum, diestrus, rep 1 |
| GSM3765069 |
duo_B2: Duodenum, diestrus, rep 2 |
| GSM3765070 |
duo_B3: Duodenum, diestrus, rep 3 |
| GSM3765071 |
heart_A1: Heart, estrus, rep 1 |
| GSM3765072 |
heart_A2: Heart, estrus, rep 2 |
| GSM3765073 |
heart_A3: Heart, estrus, rep 3 |
| GSM3765074 |
heart_B1: Heart, diestrus, rep 1 |
| GSM3765075 |
heart_B2: Heart, diestrus, rep 2 |
| GSM3765076 |
heart_B3: Heart, diestrus, rep 3 |
| GSM3765077 |
hypo_A1: Hypothalamus, estrus, rep 1 |
| GSM3765078 |
hypo_A2: Hypothalamus, estrus, rep 2 |
| GSM3765079 |
hypo_A3: Hypothalamus, estrus, rep 3 |
| GSM3765080 |
hypo_B1: Hypothalamus, diestrus, rep 1 |
| GSM3765081 |
hypo_B2: Hypothalamus, diestrus, rep 2 |
| GSM3765082 |
hypo_B3: Hypothalamus, diestrus, rep 3 |
| GSM3765083 |
kidney_A1: Kidney, estrus, rep 1 |
| GSM3765084 |
kidney_A2: Kidney, estrus, rep 2 |
| GSM3765085 |
kidney_A3: Kidney, estrus, rep 3 |
| GSM3765086 |
kidney_B1: Kidney, diestrus, rep 1 |
| GSM3765087 |
kidney_B2: Kidney, diestrus, rep 2 |
| GSM3765088 |
kidney_B3: Kidney, diestrus, rep 3 |
| GSM3765089 |
liver_A1: Liver, estrus, rep 1 |
| GSM3765090 |
liver_A2: Liver, estrus, rep 2 |
| GSM3765091 |
liver_A3: Liver, estrus, rep 3 |
| GSM3765092 |
liver_B1: Liver, diestrus, rep 1 |
| GSM3765093 |
liver_B2: Liver, diestrus, rep 2 |
| GSM3765094 |
liver_B3: Liver, diestrus, rep 3 |
| GSM3765095 |
muscle_A1: Muscle, estrus, rep 1 |
| GSM3765096 |
muscle_A2: Muscle, estrus, rep 2 |
| GSM3765097 |
muscle_A3: Muscle, estrus, rep 3 |
| GSM3765098 |
muscle_B1: Muscle, diestrus, rep 1 |
| GSM3765099 |
muscle_B2: Muscle, diestrus, rep 2 |
| GSM3765100 |
muscle_B3: Muscle, diestrus, rep 3 |
| GSM3765101 |
ovary_A1: Ovary, estrus, rep 1 |
| GSM3765102 |
ovary_A2: Ovary, estrus, rep 2 |
| GSM3765103 |
ovary_A3: Ovary, estrus, rep 3 |
| GSM3765104 |
ovary_B1: Ovary, diestrus, rep 1 |
| GSM3765105 |
ovary_B2: Ovary, diestrus, rep 2 |
| GSM3765106 |
ovary_B3: Ovary, diestrus, rep 3 |
| GSM3765107 |
spleen_A1: Spleen, estrus, rep 1 |
| GSM3765108 |
spleen_A2: Spleen, estrus, rep 2 |
| GSM3765109 |
spleen_A3: Spleen, estrus, rep 3 |
| GSM3765110 |
spleen_B1: Spleen, diestrus, rep 1 |
| GSM3765111 |
spleen_B2: Spleen, diestrus, rep 2 |
| GSM3765112 |
spleen_B3: Spleen, diestrus, rep 3 |
| GSM3765113 |
stomach_A1: Stomach, estrus, rep 1 |
| GSM3765114 |
stomach_A2: Stomach, estrus, rep 2 |
| GSM3765115 |
stomach_A3: Stomach, estrus, rep 3 |
| GSM3765116 |
stomach_B1: Stomach, diestrus, rep 1 |
| GSM3765117 |
stomach_B2: Stomach, diestrus, rep 2 |
| GSM3765118 |
stomach_B3: Stomach, diestrus, rep 3 |
| GSM3765119 |
vein_A1: Vein, estrus, rep 1 |
| GSM3765120 |
vein_A2: Vein, estrus, rep 2 |
| GSM3765121 |
vein_A3: Vein, estrus, rep 3 |
| GSM3765122 |
vein_B1: Vein, diestrus, rep 1 |
| GSM3765123 |
vein_B2: Vein, diestrus, rep 2 |
| GSM3765124 |
vein_B3: Vein, diestrus, rep 3 |
| GSM3765125 |
WAT_A1: White adipose tissue, estrus, rep 1 |
| GSM3765126 |
WAT_A2: White adipose tissue, estrus, rep 2 |
| GSM3765127 |
WAT_A3: White adipose tissue, estrus, rep 3 |
| GSM3765128 |
WAT_B1: White adipose tissue, diestrus, rep 1 |
| GSM3765129 |
WAT_B2: White adipose tissue, diestrus, rep 2 |
| GSM3765130 |
WAT_B3: White adipose tissue, diestrus, rep 3 |
| GSM3765131 |
womb_A1: Womb, estrus, rep 1 |
| GSM3765132 |
womb_A2: Womb, estrus, rep 2 |
| GSM3765133 |
womb_A3: Womb, estrus, rep 3 |
| GSM3765134 |
womb_B1: Womb, diestrus, rep 1 |
| GSM3765135 |
womb_B2: Womb, diestrus, rep 2 |
| GSM3765136 |
womb_B3: Womb, diestrus, rep 3 |
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| Relations |
| BioProject |
PRJNA542812 |
| SRA |
SRP198354 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE131172_ExpressionMatrix.txt.gz |
3.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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