|
| Status |
Public on Jun 04, 2020 |
| Title |
H4K16ac developmental dynamics during Drosophila development [DNA] |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
H4K16ac developmental dynamics during drosophila development
|
| |
|
| Overall design |
We are submitting a) MNase ChIPseq profiles of H4K16ac from hand staged Drosophila embryos at various developmental stages derived from WT and MSL complex RNAi conditions, b) Pol II ChIP-seq of nc14/ st5 embryos upon control and maternal mof depletion, c) ATAC-seq of nc9-13/ st3-4 and nc14 / st5 embryo upon control and maternal depletion of mof or msl-3, and d) In situ Hi-C of st5 and st15 embryos upon control or mof maternal depletion.
|
| |
|
| Contributor(s) |
Samata M, Renschler G, Richard G, Alexiadis A, Akhtar A |
| Citation(s) |
32502394 |
| |
| Submission date |
Apr 25, 2019 |
| Last update date |
Jun 17, 2020 |
| Contact name |
Asifa Akhtar |
| E-mail(s) |
[email protected]
|
| Organization name |
Max Planck Institute of Immunobiology and Epigenetics
|
| Department |
Chromatin Regulation
|
| Lab |
Akhtar Lab
|
| Street address |
Stuebeweg 51
|
| City |
Freiburg |
| ZIP/Postal code |
79108 |
| Country |
Germany |
| |
|
| Platforms (2) |
| GPL19132 |
Illumina NextSeq 500 (Drosophila melanogaster) |
| GPL23323 |
Illumina HiSeq 3000 (Drosophila melanogaster) |
|
| Samples (70)
|
|
| This SubSeries is part of SuperSeries: |
| GSE130335 |
Intergenerationally maintained Histone H4 lysine 16 acetylation is instructive for future gene activation |
|
| Relations |
| BioProject |
PRJNA535514 |
| SRA |
SRP193880 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE130334_ATACseq_processed_data.tar.gz |
677.0 Kb |
(ftp)(http) |
TAR |
| GSE130334_ChIP-seq_bigwig.tar.gz |
1.6 Gb |
(ftp)(http) |
TAR |
| GSE130334_st15_H3_controlRNAi_log2Input_min140_ext_rep3.bw |
139.0 Mb |
(ftp)(http) |
BW |
| GSE130334_st15_H3_msl3RNAi_log2Input_min140_ext_rep2.bw |
159.7 Mb |
(ftp)(http) |
BW |
| GSE130334_st15_H4K16ac_controlRNAi_log2Input_min140_ext_rep3.bw |
163.4 Mb |
(ftp)(http) |
BW |
| GSE130334_st15_H4K16ac_msl3RNAi_log2Input_min140_ext_rep2.bw |
159.9 Mb |
(ftp)(http) |
BW |
| GSE130334_st15_TADs.bed.gz |
38.1 Kb |
(ftp)(http) |
BED |
| GSE130334_st15_mof_f_2500bp.A.norm_cor.h5 |
132.3 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_mof_f_2500bp.X.norm_cor.h5 |
14.5 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_mof_f_40000bp_compartments.bedgraph.gz |
38.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st15_mof_f_TADs_insulation.bw |
816.1 Kb |
(ftp)(http) |
BW |
| GSE130334_st15_mof_m_2500bp.A.norm_cor.h5 |
152.5 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_mof_m_2500bp.X.norm_cor.h5 |
19.9 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_mof_m_40000bp_compartments.bedgraph.gz |
38.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st15_mof_m_TADs_insulation.bw |
817.4 Kb |
(ftp)(http) |
BW |
| GSE130334_st15_wt_f_2500bp.A.norm_cor.h5 |
136.1 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_wt_f_2500bp.X.norm_cor.h5 |
15.0 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_wt_f_40000bp_compartments.bedgraph.gz |
38.0 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st15_wt_f_TADs_insulation.bw |
816.4 Kb |
(ftp)(http) |
BW |
| GSE130334_st15_wt_m_2500bp.A.norm_cor.h5 |
146.0 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_wt_m_2500bp.X.norm_cor.h5 |
19.2 Mb |
(ftp)(http) |
H5 |
| GSE130334_st15_wt_m_40000bp_compartments.bedgraph.gz |
38.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st15_wt_m_TADs_insulation.bw |
816.5 Kb |
(ftp)(http) |
BW |
| GSE130334_st5_TADs.bed.gz |
36.3 Kb |
(ftp)(http) |
BED |
| GSE130334_st5_mof_2500bp.A.norm_cor.h5 |
104.8 Mb |
(ftp)(http) |
H5 |
| GSE130334_st5_mof_2500bp.X.norm_cor.h5 |
14.3 Mb |
(ftp)(http) |
H5 |
| GSE130334_st5_mof_40000bp_compartments.bedgraph.gz |
38.0 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st5_mof_TADs_insulation.bw |
740.8 Kb |
(ftp)(http) |
BW |
| GSE130334_st5_wt_2500bp.A.norm_cor.h5 |
88.1 Mb |
(ftp)(http) |
H5 |
| GSE130334_st5_wt_2500bp.X.norm_cor.h5 |
11.8 Mb |
(ftp)(http) |
H5 |
| GSE130334_st5_wt_40000bp_compartments.bedgraph.gz |
39.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE130334_st5_wt_TADs_insulation.bw |
740.9 Kb |
(ftp)(http) |
BW |
| GSE130334_stage5_Hi-C_control_2.5kb.h5 |
22.9 Mb |
(ftp)(http) |
H5 |
| GSE130334_stage5_Hi-C_control_2.5kb_ICE.h5 |
108.3 Mb |
(ftp)(http) |
H5 |
| GSE130334_stage5_Hi-C_mof_RNAi_2.5kb.h5 |
30.8 Mb |
(ftp)(http) |
H5 |
| GSE130334_stage5_Hi-C_mof_RNAi_2.5kb_ICE.h5 |
128.9 Mb |
(ftp)(http) |
H5 |
| GSE130334_stage5_control_2.5kb_TAD_boundaries.bed.gz |
36.3 Kb |
(ftp)(http) |
BED |
| GSE130334_stage5_mof_RNAi_2.5kb_TAD_boundaries.bed.gz |
34.9 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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