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Series GSE129981 Query DataSets for GSE129981
Status Public on May 10, 2020
Title Liquid-infused structured titanium surfaces for dental implants: antiadhesive mechanism to repel bacterial biofilms
Organism Streptococcus oralis
Experiment type Expression profiling by high throughput sequencing
Summary To combat dental implant-associated infections, there is a need for novel materials which effectively inhibit bacterial biofilm formation. In the present study, a titanium surface functionalization based on the “slippery liquid-infused porous surfaces” (SLIPS) principle was analyzed in an oral flow chamber system. The immobilized liquid layer was stable over 13 days of continuous flow. With increasing flow rates, the surface exhibited a significant reduction in attached biofilm of both the oral initial colonizer Streptococcus oralis and an oral multi-species biofilm composed of S. oralis, Actinomyces naeslundii, Veillonella dispar and Porphyromonas gingivalis. Using single cell force spectroscopy, reduced bacterial adhesion forces on the lubricant layer could be measured. Gene expression patterns in biofilms on SLIPS, on control surfaces and planktonic cultures were also compared. For this purpose, the genome of S. oralis strain ATCC® 9811TM was sequenced using PacBio Sequel technology. Even though biofilm cells showed clear changes in gene expression compared to planktonic cells, no differences could be detected between bacteria on SLIPS and on control surfaces. Therefore, it can be concluded that the ability of liquid-infused titanium to repel biofilms is solely due to weakened bacterial adhesion to the underlying liquid interface.
 
Overall design Examination of Streptococcus oralis gene expression in biofilms on SLIPS and titanium control surfaces and in planktonic cultures
 
Contributor(s) Doll K, Szafrański SP, Yang I, Bei der Wieden G
Citation(s) 31173692
Submission date Apr 17, 2019
Last update date Sep 10, 2020
Contact name Katharina Doll
E-mail(s) [email protected]
Organization name Hannover Medical School
Street address Carl-Neuberg-Str. 1
City Hannover
ZIP/Postal code 30625
Country Germany
 
Platforms (1)
GPL26513 Illumina HiSeq 2500 (Streptococcus oralis)
Samples (11)
GSM3728911 K2_Titanium
GSM3728912 K3_SLIPS
GSM3728913 K4_Planktonic
Relations
BioProject PRJNA533328
SRA SRP192889

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129981_NormalizedCounts_BF_SLIPS_vs_Planktonic.txt.gz 121.1 Kb (ftp)(http) TXT
GSE129981_NormalizedCounts_BF_Titanium_vs_BF_SLIPS.txt.gz 132.9 Kb (ftp)(http) TXT
GSE129981_NormalizedCounts_BF_Titanium_vs_Planktonic.txt.gz 121.4 Kb (ftp)(http) TXT
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