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Series GSE125872 Query DataSets for GSE125872
Status Public on May 22, 2020
Title iPS derived microglia like cells cultured with human neurons and astrocytes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In this article, Jose Polo and colleagues molecularly compare existing microglia differentiation methods from stem cells, generate a new dual fluorescent and enzymatic reporter tool to study microglia in vitro and in vivo and show that human astrocyte/neuron co-culture pushes the regulatory landscape of in vitro microglia-like cells to more closely resemble bona fide microglia.
 
Overall design RNA-seq experiment examination of iPS-derived microglia like cells cultured in presence (or not) of human astrocytes/neurons, or cholesterol
 
Contributor(s) Polo JM, Grubman A, Vandekolk TH, Schröder J, Sun G, Hunt C, Haynes JM, Pouton CW
Citation(s) 32442534
Submission date Jan 29, 2019
Last update date Jun 10, 2020
Contact name Jan Schroeder
E-mail(s) [email protected]
Phone 0433419028
Organization name Monash University
Department Anatomy & Developmental Biology
Lab Epigenetics & Reprogramming
Street address Building 75 Innovation Walk
City Clayton
State/province VIC
ZIP/Postal code 3168
Country Australia
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (16)
GSM3583749 CD44_iMGpReN [CTCTCTAC]
GSM3583750 CD44_ReN [CGAGGCTG]
GSM3583751 iMG_ReN [AAGAGGCA]
Relations
BioProject PRJNA517743
SRA SRP182875

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125872_counts_table.txt.gz 4.8 Mb (ftp)(http) TXT
GSE125872_results.tar.gz 369.2 Kb (ftp)(http) TAR
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Raw data are available in SRA
Processed data are available on Series record

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