|
| Status |
Public on Jun 19, 2019 |
| Title |
Single Cell RNA-Seq profiling of human embryonic kidney outer and inner cortical cells and kidney organoid cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To study the developmental process of human podocytes and compare to the in vitro counterpart, we dissociated cells from the inner and outer kidney cortex as well as kidney organoids, and performed 10X Genomics single-cell RNA sequencing.
|
| |
|
| Overall design |
Identifying cell types and studying human podocyte developmental process in human kidney and in organoids
|
| |
|
| Contributor(s) |
Ransick A, Tran TT, Lindstrom NO, De Sena Brandine G, McMahon AP |
| Citation(s) |
31265809 |
| |
| Submission date |
Dec 28, 2018 |
| Last update date |
Sep 20, 2019 |
| Contact name |
Andrew P McMahon |
| E-mail(s) |
[email protected]
|
| Phone |
323-442-7847
|
| Organization name |
University of Southern California
|
| Department |
Stem Cell Biol & Regen Med
|
| Lab |
Andrew McMahon
|
| Street address |
1425 San Pablo St, BCC 312
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90033 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (8)
|
| GSM3534656 |
H17w_Z1: human week 17 kidney, Zone1 single cell RNA-Seq |
| GSM3534657 |
H17w_Z2: human week 17 kidney, Zone2 single cell RNA-Seq |
| GSM3534658 |
H15w_Z1: human week 15 kidney, Zone1 single cell RNA-Seq |
| GSM3534659 |
H15w_Z2: human week 15 kidney, Zone2 single cell RNA-Seq |
| GSM3534660 |
HuOrg_D16_1: human kidney organoid, differentiation day 16, sample 1 |
| GSM3534661 |
HuOrg_D16_2: human kidney organoid, differentiation day 16, sample 2 |
| GSM3534662 |
HuOrg_D28_1: human kidney organoid, differentiation day 28, sample 1 |
| GSM3534663 |
HuOrg_D28_2: human kidney organoid, differentiation day 28, sample 2 |
|
| Relations |
| BioProject |
PRJNA512105 |
| SRA |
SRP174653 |
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