|
| Status |
Public on Dec 07, 2010 |
| Title |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: expression data |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
These microarrays are part of a study where a comparison was made between the change in transcription and H3K4 mono-, di-, and tri-methylation levels (via ChIP-seq) in the Arabidopsis thaliana genome when plants are subjected to water deficit stress. Water deficit stress causes a large number of genes to change their transcript levels, which provided a large set of genes to examine for corresponding chromatine changes.
Keywords: stress response
|
| |
|
| Overall design |
Arabidopsis thaliana RNA was isolated from control (watered) and treatment (water-deficit) samples for analysis on microarrays with three biological reps.
|
| |
|
| Contributor(s) |
van Dijk K, Riethoven JM, Yang J, Laczko P, Chen H, Xia Y, Ladunga I, Fromm ME |
| Citation(s) |
21050490 |
| |
| Submission date |
May 22, 2008 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Jean-Jack M. Riethoven |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Nebraska-Lincoln
|
| Department |
Beadle Center for Biotechnology
|
| Lab |
Bioinformatics Core Research Facility
|
| Street address |
1901 Vine Street
|
| City |
Lincoln |
| State/province |
NE |
| ZIP/Postal code |
68588-0665 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
|
| Samples (6)
|
|
| This SubSeries is part of SuperSeries: |
| GSE11658 |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation |
|
| Relations |
| BioProject |
PRJNA109137 |
Less...
More...