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Series GSE113877 Query DataSets for GSE113877
Status Public on May 01, 2018
Title Genome-wide chromatin maps in the liver from male and female Wistar rats
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We carry out H3K27pan-acetly chromatin imminoprecipitation (ChIP) and H3K4me1 ChIP prior to sequencing on the Illumina Nextseq 500 sequencing platform to report on the genome-wide epigenetic patterns in rat livers
 
Overall design Genome-wide patterns were generate on Illumina Nextseq 500
 
Contributor(s) Thomson JP, Ottaviano R, Fawkes A, Clark R, Murphy L, Meehan RR
Citation(s) 29130343
Submission date Apr 30, 2018
Last update date Jan 17, 2019
Contact name John Paterson Thomson
E-mail(s) [email protected]
Organization name University of Edinburgh
Department MRC Human Genetics Unit
Lab Meehan
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (16)
GSM3122279 Input_chip_WIS_male_pooled_1
GSM3122280 Input_chip_WIS_male_pooled_2
GSM3122281 H3K27ac_Chipseq_WIS_male_1
Relations
BioProject PRJNA454317
SRA SRP144084

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113877_RAW.tar 1.4 Gb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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