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Series GSE110820 Query DataSets for GSE110820
Status Public on Jul 03, 2019
Title Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [RNA-Seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To understand the molecular differences between adipocytes and their contribution to cell-type specific function, we comprehensively characterised the transcriptomes and DNA methylomes using WGBS of isolated adipocytes from the SAT and VAT from normal weight individuals
 
Overall design WGBS, RNA-seq, and microarrays were used to study epigenetics and transcriptomics human cancer isolated subcutaneous (abdominal - SA) and vieceral (omental - VA) adipocyte, peripheral blood leukocytes (PBL) and visceral adipose tissue (VAT).
 
Contributor(s) Bradford ST
Citation(s) 31266983
Submission date Feb 20, 2018
Last update date Jul 26, 2019
Contact name Stephen Bradford
Organization name Garvan Institute of Medical Research
Street address 384 Victoria St
City Darlinghurst
State/province NSW
ZIP/Postal code 2010
Country Australia
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (6)
GSM3017199 PA_RNA_SA_E013
GSM3017200 PA_RNA_SA_E018
GSM3017201 PA_RNA_SA_E023
This SubSeries is part of SuperSeries:
GSE110821 Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes
Relations
BioProject PRJNA434654
SRA SRP133095

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110820_RAW.tar 2.2 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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