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Series GSE110687 Query DataSets for GSE110687
Status Public on Feb 21, 2018
Title Chromatine immunoprecipation of atonal binding sites in Drosophila L3 Brains
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Atonal is a proneural transcription factor expressed in the Drosophila neuroblast cluster known as the inner proliferation center (IPC). To characterize the putative targes of Atonal in the IPC we have used an endogenously GFP-tagged version of atonal to immunoprecipate brain samples with anti-GFP antibodies
 
Overall design L3 larvae of the Ato::GFP genotype where dissected to collect developing brains. The fixed sample was homogenized by sonication. A 10% of the sonicated volume was processed as input controls while the rest was Immunoprecipitated with antiGFP antibodies, purified and sequence.
 
Contributor(s) Mora N, Fiers M, Hassan B
Citation(s) 29576424
Submission date Feb 15, 2018
Last update date Mar 22, 2019
Contact name Mark Fiers
E-mail(s) [email protected]
Organization name VIB
Department Center for Brain and Disease
Street address Herestraat 49
City Leuven
ZIP/Postal code 3000
Country Belgium
 
Platforms (1)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (4)
GSM3011855 L3-Brain_atoIP_1
GSM3011856 L3-Brain_atoIP_2
GSM3011857 L3-Brain_input_1
Relations
BioProject PRJNA434661
SRA SRP133106

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110687_brain_peaks.bed.gz 38.5 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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