 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 11, 2018 |
| Title |
Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression [RNA-seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Tissue regeneration relies on resident stem cells (SCs), whose activity and lineage choices are influenced by microenvironment. Exploiting the synchronized, cyclical bouts of tissue regeneration in hair follicles (HFs), we investigate how microenvironment dynamics shape the emergence of SC lineages. Employing epigenetic and ChIP-seq profiling, we uncover how signal-dependent transcription factors couple spatio-temporal cues to chromatin dynamics, thereby choreographing SC lineages. Using enhancer-driven reporters, mutagenesis and genetics, we show that simultaneous BMP-inhibitory and WNT signals set the stage for lineage choices by establishing chromatin platforms permissive for diversification. Mechanistically, when binding of BMP-effector pSMAD1 is relieved, super-enhancers driving HF-SC master regulators become silenced. Concomitantly, multipotent, lineage-fated super-enhancers silent in HF-SCs become activated by exchanging WNT-effectors TCF3/4 for LEF1. Throughout regeneration, lineage super-enhancers continue reliance upon LEF1, but then achieve specificity by accommodating additional incoming signaling effectors. Barriers to progenitor plasticity mount as diverse, signal-sensitive transcription factors shape LEF1-regulated super-enhancer dynamics.
|
| |
|
| Overall design |
Mouse activated hair gem stem cells (by hair depilation, day3) were purified from wild-type, LEF1 single knock out, and LEF1/TCF7 double knock out mice. The sorted cells were analyzed by RNAseeq.
|
| |
|
| Contributor(s) |
Adam R, Yang H, Fuchs E |
| Citation(s) |
29337183 |
| |
| Submission date |
Jul 06, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Hanseul Yang |
| E-mail(s) |
[email protected]
|
| Organization name |
Rockefeller University
|
| Lab |
Fuchs lab
|
| Street address |
1230 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (6)
|
|
| This SubSeries is part of SuperSeries: |
| GSE100876 |
Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression |
|
| Relations |
| BioProject |
PRJNA393331 |
| SRA |
SRP111197 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE100874_RAW.tar |
8.9 Mb |
(http)(custom) |
TAR (of TXT) |
| GSE100874_WT_LEF1cKO_LEF1TCF7dKO_TPM.txt.gz |
672.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...