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Platform GPL9937 Query DataSets for GPL9937
Status Public on Apr 06, 2010
Title Ectocarpus siliculosus tiling array ChIP7
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 06, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497637, GSM497638
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
65970561.501.5 501 5 CCGCTACCACCACCACCACCATCATCGTTCGCCGCTCCGCCAACGCCAAA BLOCK1
65833146.503.5 503 5 TTAGCTGCCTGACCGGGAGAGAATCGAGAGTTGCGTACCAATGGACTTTT BLOCK1
65981102.505.5 505 5 AGATGGATTCGTTGTGTCGTTAAGAATCACCTGTACAGTGGTGGCTATGG BLOCK1
66073614.507.5 507 5 TAAGCCTTTTTTTGTAGTATAATAACCTTGATGGGCTGGGAATGTCCGGC BLOCK1
66022167.509.5 509 5 ATTCGGATGTTGGGCCGGGACGCGGCCAAATAAGGCCCTCATTGTACGAG BLOCK1
65767121.511.5 511 5 ATTACCACTTTCCACGCGGTACAGTTATTTGCTCACGGTACGCAGGCGTT BLOCK1
65884238.513.5 513 5 CGTCGCCGGCGCCGCCCGTCCCGTTCTCGGGGTGCCGCCTGACGGATCTC BLOCK1
65850899.515.5 515 5 TGGTGGTACATGTTTTTAACCATATGTTACTGCCCTCCCTCCCATACGAT BLOCK1
65936664.517.5 517 5 GGGGAAGAAGAAGGGCATGAAAGGTAGTCCTTGACTCTTTTACCTCCTGC BLOCK1
65936636.519.5 519 5 TTGTGGCTGTTGGCACCATCGTCGCTACCGCCGGCTTGCGAAAAGACCCG BLOCK1
65982921.521.5 521 5 CTCATCAGTACAGCACAACCACACGTACGTAGTGTTCGGTCTTAGGTTGC BLOCK1
66037522.523.5 523 5 AGCTACCGGCATAGGAAGAAGAAGGAGAAACAAGCGGCTTTGGAGGCCAG BLOCK1
65945798.525.5 525 5 ATTGTGAAATTGTTGATTTGACTACTCTGTGAACACGTGCTTGAAATTTG BLOCK1
66029673.527.5 527 5 AAACCCGAGACAATATAGATCACATGTAGACGAACCGTACCTCCACTCTT BLOCK1
65857745.529.5 529 5 ACATGCGCACCTTATTCCGTTCGAAGCTTCCAGAAGAAACGCGATTTCCG BLOCK1
66086409.531.5 531 5 TTTTAACGATCGATGTGATGTCACGATGTCACCAGGAGGGAATCTCATCA BLOCK1
66093339.533.5 533 5 AATTGTTTGTCTTGTCTTCGATGTTTCTTTTTTTTTTTGTCCACGTGCGT BLOCK1
65893226.535.5 535 5 GACATTCGTATTATTGCCGTTCTCTTGGCGTATTTCGACGACAACGTCAA BLOCK1
65965626.537.5 537 5 TGAAACGCGACCGAGTGTCGTTTGGGGTCCACCCTTCCCCGTTCGAATTG BLOCK1
66020741.539.5 539 5 CAATGATAGCGGAGACGGCGGTGCCCGTGATTTAAAGGTTCGGCAGCCTG BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9937_080130_Esili_MS_ChIP7.ndf.gz 14.4 Mb (ftp)(http) NDF

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