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Platform GPL9935 Query DataSets for GPL9935
Status Public on Apr 06, 2010
Title Ectocarpus siliculosus tiling array ChIP5
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 06, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497633, GSM497634
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
65943529.240.4 240 4 ATCGAACCTACCCCCGCCAGAATCAGCGAATCGCCATCGCTTCCGCCTAG BLOCK1
65780621.242.4 242 4 ATCGTCGAGGTTCCGCTTGAACGCTTTCGCGGTAACCTCCACACGGCCAG BLOCK1
66103280.244.4 244 4 CGGGTTGAAGAAAACGGCCGCAATGATACGTGCCGTACGATACACTCGCG BLOCK1
65775858.246.4 246 4 GACGCGGAGGAAGACAATTTGACAGGTTTCTTCTACAAGCTGGTGGTGTA BLOCK1
65957727.248.4 248 4 TAGCGGTTTCAATACAAAATTCACACGGTCTTGCTTCTCTCGCTTGAACC BLOCK1
65891659.250.4 250 4 GAGCGGTAAGGGTGGGCGACCGGACGCTGGAAAGGCAAGAGCGGCTGGCG BLOCK1
65955384.252.4 252 4 CCTCCCGCGGATCCTTGACGCGCGCTGGGCCTTGTATGCATGCTTCTTGC BLOCK1
65903249.254.4 254 4 GTCGACGGTGAGTCCGAGCCAGCAGCAGCAGCAGCACCAGCTGCGCAAGC BLOCK1
66106586.256.4 256 4 TGCGCAAGTGTCGCGATCATCATGCGCAAGTGCCGCCGTCCTCTTCACCG BLOCK1
65884655.258.4 258 4 GGTGGGCGGGTGGGAAAATCGATCAAGGCCCTAACTTCCACGCTCCTTCC BLOCK1
65997407.260.4 260 4 GGCCTCATGCGTCGGGTAGATACTCTGCCCCCGGGGGAAATCCCGGACAA BLOCK1
65929805.262.4 262 4 AGTGTGAAGATGTCAGCCCTGCCATCCTGAGAGGAGAGTGAGTCGGAACG BLOCK1
66064780.264.4 264 4 CAGGGAGTATTACGATGACATGCTTGCGTAGAACGGGGTGAATATTATTC BLOCK1
65869757.266.4 266 4 CGAATACACCGACGATACAAGCTGCATCGATAATCGACGCAACTTTCATC BLOCK1
66114728.268.4 268 4 TACTGGCTATGTACCCCCCCCTGGCTCTCTCCCTTCCGCTCTCTTGAGTA BLOCK1
65969320.270.4 270 4 GCAGTTGACGGTGGGTGGTGCAGCAAGCTTGGCAGTTTTGTCAAGGTTGC BLOCK1
65791718.272.4 272 4 ACAGGGCGACAGTAGAGGCTGTTAAAACCGAAGTGCTACATTTCAAGCGT BLOCK1
66103311.274.4 274 4 GACACATTTCCAAGGCGCTGGCCTTATTCCCGACAGCATCATCTTCATGG BLOCK1
65852286.276.4 276 4 TCATTTATTATGTACCGTCAACTTTTGCAAACCAAACTTGTGGGCGTCCT BLOCK1
65759206.278.4 278 4 GTCTGAAACTTGCTATGGAGTCACCTACCACCATCCACCCTCATCCCGAT BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9935_080130_Esili_MS_ChIP5.ndf.gz 14.4 Mb (ftp)(http) NDF

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