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Platform GPL9932 Query DataSets for GPL9932
Status Public on Apr 07, 2010
Title Ectocarpus siliculosus tiling array ChIP2
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 07, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497627, GSM497628
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
64151517.273.227 273 227 GCAGTTTCGCCCCCCTGCATATACTGTAGTAAACTGGGAAGGTACTACTG BLOCK1
63777955.275.227 275 227 CTCTGCTGCCCACATAACCCCGCCCCCCCCTCTATTCTGTCCCAGGACGA BLOCK1
64030255.277.227 277 227 ACCATCCATGTGCTGCTCAAAGGTGGCATGCCTACAACACGTCCCGCTCA BLOCK1
64035167.279.227 279 227 GTTGACATGCTGTAGCGTGTCCGCGCGGACCGCTGTCTGCTGCGTAGTAG BLOCK1
64137094.281.227 281 227 GTCTCGGGCGTGGCAGATTTAGGCGACGTCGACGCTGTCTCTGGGGACGG BLOCK1
64006726.283.227 283 227 GGGCGTGGAGTGTCCTCCTACGGAGCTGACTCCTGCCATGGCGACGTCGA BLOCK1
63824912.285.227 285 227 ATACCGCGAGGTGGTCTCATCCCCACTGATGTTATTGCCCTTACATCCGA BLOCK1
64002539.287.227 287 227 CCGCCGTCGCCTCGAGCGCTAGGGGGCGTACCTCCTCCCCCGCGTGCCAA BLOCK1
63907851.289.227 289 227 AGACGTTGGCGGGCGCGAGGGCGGTCAGGGGTGCATATTCGTGAGTCGGA BLOCK1
64028626.291.227 291 227 AGACAAAAAAACAAGACGGCACCCAAGAAACGAAAAGAAGGAACAACCAA BLOCK1
63865710.293.227 293 227 ACAGCAGTACTCGTGTTGATGGTGTCGAGTTCTTTGTGCAATATTGTGCA BLOCK1
64044405.295.227 295 227 TCTCGAGAGGGAATACTTCCGTCTTTCTTCCTTGCCCATGTCGTTTTTAA BLOCK1
63969989.297.227 297 227 TTGAGGCTCAGGTCCCAGGACAGCGTCGCCGGGCGCCTCGAGCGCGCCCC BLOCK1
63921889.299.227 299 227 GTCCAGGACTGGGTGGGCATGAGGGGCCAGATCACAGAATACGCCCCCTG BLOCK1
63841090.301.227 301 227 GGCAGTACCAAAAACATAATCCATCCCTGTTACGACGCCTACTGTCTGTA BLOCK1
63958783.303.227 303 227 ACGGGTACAGGCTGGAGCTGCAGGCCGAGAGCGAAGACGAGATGCTCAAG BLOCK1
63967066.305.227 305 227 CTACACCCAGGAGGTGGACTATCCCGACGTTGCTGTTCAGGTGGGGTGAT BLOCK1
63987524.307.227 307 227 TTTTTTTGTTGAGAGTCCTCGGGGATCGTATCTCGTACCACCGAGTATGT BLOCK1
63948409.309.227 309 227 CGCCTTCTCCGCGGTCTCCAGCAGCTGCATGCGTCACACAACATCGGTAT BLOCK1
64105812.311.227 311 227 GTCCGTTCTTGTGGCATGAGTAGCGGTGGCTGTTCTGTTCTCTACGCAAT BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9932_080130_Esili_MS_ChIP2.ndf.gz 14.4 Mb (ftp)(http) NDF

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