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Platform GPL9825 Query DataSets for GPL9825
Status Public on Feb 18, 2010
Title Agilent-016322 Yeast (V2) Gene Expression 8x15K Microarray (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol Agilent 60-mer SurePrint technology.
See manufacturer's web site at http://www.agilent.com/.
 
Description 15,208 S. cerevisiae (S288C strain) ORFs represented.
Contents sourced from Saccharomyces Genome Database (SGD), January, 2004.

This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, and response to drug candidates.

Arrays of this design have barcodes that begin with 16016322 or 2516322.
Agilent part number (V2): G4813A

Orientation:
Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL16244
 
Submission date Dec 23, 2009
Last update date Jul 14, 2016
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (434) GSM493276, GSM493277, GSM493278, GSM493279, GSM493280, GSM493281 
Series (30)
GSE19634 Gene Expression of MATa yeast segregants (YJM789 X S96) after alpha factor treatment
GSE19636 Genetic Analysis of Variation in Transcription Factor Binding in Yeast
GSE25004 Suppression of statin effectiveness by copper and zinc in yeast and human cells
Relations
Alternative to GPL13340
Alternative to GPL16244

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Probe name
ORF Locus tag, SGD systematic name
CONTROL_TYPE Control type
GENE_SYMBOL Gene symbol
ACCESSION_STRING Accession string
DESCRIPTION Description
SEQUENCE Sequence of oligonucleotide
SPOT_ID

Data table
ID COL ROW NAME ORF CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING DESCRIPTION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner pos GE_BrightCorner
2 96 162 DarkCorner pos DarkCorner
3 96 160 DarkCorner pos DarkCorner
4 96 158 A_06_P5648 YMR209C FALSE ORF:YMR209C sgd|YMR209C BioProcess=biological_process unknown GGATTGAATGGCTATTTAACTGATTATGAGTCAATGTATCAAGGATACTATGGTCTGCTT
5 96 156 A_06_P6281 YOL088C FALSE MPD2 sgd|YOL088C BioProcess=protein folding* AAATCATTCGTCTACAATTGAGCCTATTATCACACATAGAAGACCAGTTAGAAGATACCA
6 96 154 A_06_P2964 YGL009C FALSE LEU1 sgd|YGL009C BioProcess=not yet annotated GGTCTTGATGATATTGGTATTACATTGCAAAAGGAAGAATACATTTCCAGATACGAAGCT
7 96 152 A_06_P5642 YMR203W FALSE TOM40 sgd|YMR203W BioProcess=mitochondrial translocation CACTATTGGTGCTAAGTATGAATACAGACAATCTGTATATCGTGGTACATTAGATTCCAA
8 96 150 A_06_P3070 YGL115W FALSE SNF4 sgd|YGL115W BioProcess=regulation of transcription from Pol II promoter* ATCAGAAAAGCAAGGGTGCATAGATTCTTTGTAGTTGATGACGTCGGACGGTTGGTTGGT
9 96 148 NA ignore --ignore
10 96 146 A_06_P5740 YMR299C FALSE ORF:YMR299C sgd|YMR299C BioProcess=biological_process unknown GCCCGATATATGGACTTTATACCAACAATTGATAAAATCAGAGAAGATAGGAAAACAACC
11 96 144 A_06_P1686 YCR064C FALSE ORF:YCR064C sgd|YCR064C BioProcess=biological_process unknown CTTGACGGCTGTAGAGGTGTTTACATTGATGATGAGTCCCTAAGAAAATTTTTCTTTTTT
12 96 142 A_06_P6846 YPL087W FALSE YDC1 sgd|YPL087W BioProcess=sphingolipid metabolism GGTGTCTATATCTTCGTCGTGTATTTGCAATATTTGAGAATATTAACCCATGGAAATCCA
13 96 140 A_06_P6688 YOR324C FALSE ORF:YOR324C sgd|YOR324C BioProcess=biological_process unknown AATCCATCTACCTGTATAGGTATTTCATCATTGACATTATTGCATTTCTTTTGATGGGCG
14 96 138 A_06_P2601 YEL059W FALSE ORF:YEL059W sgd|YEL059W BioProcess=biological_process unknown TTGCTTGCTTGTGCGTCATGGTCACTTTTGTTAGAAGTGAGCCGCATAAAATGGCATGTC
15 96 136 A_06_P4654 YKR017C FALSE ORF:YKR017C sgd|YKR017C BioProcess=biological_process unknown TCGGATGCATCTCATAATTTGACGAAGATTTTCGTTGATAACCAAATGCTCTTAGCCAAC
16 96 134 A_06_P6546 YOR184W FALSE SER1 sgd|YOR184W BioProcess=not yet annotated TTCTAAAAGAGGCAGCTGCTCGTCATTTAACCGGTTTGAAAGGACATCGTTCAGTTGGTG
17 96 132 A_06_P1231 YBL098W FALSE BNA4 sgd|YBL098W BioProcess=nicotinamide adenine dinucleotide biosynthesis GCAAACACGTATCTTGAAATTCTTAGAATCTCTGACACTCGGTATGTTATCTATTGGCGG
18 96 130 A_06_P6307 YOL114C FALSE ORF:YOL114C sgd|YOL114C BioProcess=biological_process unknown GGCAGCGATTCTATAGTAATTCAATCTGATGAAACTAGGTCAAGGGAAACCAACAAATTA
19 96 128 A_06_P6519 YOR157C FALSE PUP1 sgd|YOR157C BioProcess=ubiquitin-dependent protein catabolism TAGGTAAAGATGCAGAATACTTGAGGAATTACTTGACTCCAAATGTTAGAGAAGAAAAGC
20 96 126 A_06_P2318 YDR327W FALSE ORF:YDR327W sgd|YDR327W BioProcess=biological_process unknown ACAGTCATCAGAGGAAATGTAGGCTAACGGTCTTCAGCCCATTCATTTTCACGCCTAATG

Total number of rows: 15744

Table truncated, full table size 2012 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL9825_old_annotations.txt.gz 589.6 Kb (ftp)(http) TXT

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