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Platform GPL9158 Query DataSets for GPL9158
Status Public on Sep 30, 2009
Title Agilent Mouse array 105k
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technologies
 
Description Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
This platform is based on NCBI build 36.
 
Submission date Sep 04, 2009
Last update date Sep 30, 2009
Contact name Richard Kellermayer
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Samples (2) GSM450970, GSM450971
Series (1)
GSE18031 Comparison of murine colonic mucosal DNA from postnatal day 90 (P90) to postnatal day 30 (P30) by MSAM

Data table header descriptions
ID Agilent feature number
SEQUENCE sequence
ProbeName probe name
GeneName gene name
ORF
SystematicName
Description
GB_RANGE Accession.version[start..stop]
SPOT_ID Spot identifier

Data table
ID SEQUENCE ProbeName GeneName ORF SystematicName Description GB_RANGE SPOT_ID
1 MmCGHBrightCorner MmCGHBrightCorner MmCGHBrightCorner control
2 DarkCorner DarkCorner DarkCorner control
3 DarkCorner DarkCorner DarkCorner control
4 GTTTCTTTTTGCAGCAGCTATGGCTAGTAGTCCTCCTTAGTAGATGAAATACAAGCTTTG A_68_P08265045 chr10:082248012-082248071 chr10:082248012-082248071 Unknown NC_000076.4[082248012..082248071]
5 ACTGGTACCATCCAGTCTCCGAAGGCCTTTGTATCTTCCCCTAAA A_68_P27570107 chr11:006665414-006665458 chr11:006665414-006665458 Unknown NC_000077.4[006665414..006665458]
7 ATAAAATTCTCTTGCCTTTAGTTCAGCAATCTGGAAAGTCTCACTGAAAAACAAAGGAGT A_68_P12499791 chr16:095126174-095126233 chr16:095126174-095126233 Unknown NC_000082.4[095126174..095126233]
8 AAAACAGGATACAGAGTTGTGTTTACTAACAGCATTTTATGGCTTTCACTTTCTCTCAGC A_68_P23326884 chr4:134421087-134421146 chr4:134421087-134421146 Unknown NC_000070.4[134421087..134421146]
10 GCGCAGTATGTGGGGCCCTACCGGCTGGAGAAGACGCTGGGCAAG A_68_P25591879 chr7:141759515-141759559 chr7:141759515-141759559 Unknown NC_000073.4[141759515..141759559]
11 CTACTTTCTGATCTGTGGCCCTCTCAAGGCATCTGCATATGTGGTC A_68_P31406261 chr17:084603157-084603202 chr17:084603157-084603202 Unknown NC_000083.4[084603157..084603202]
12 AGATGGTATCCCATTGATATGCAGTGATGTGTGTAGAAGAGATTATACAGAAGTCGAGAG A_68_P31203675 chr17:045338719-045338778 chr17:045338719-045338778 Unknown NC_000083.4[045338719..045338778]
13 ATAAAGGAAACACTCTATGTCACACTTTGCTGGTTTAAGCACATCTAACTGAAACTGCTT A_68_P23571026 chr5:030479908-030479967 chr5:030479908-030479967 Unknown NC_000071.4[030479908..030479967]
14 CCGTGGCGCGCGCGGGTCCAGCCAGCCTCGGAGCCGGTGTTCCAG A_68_P06154520 chr7:004683623-004683667 chr7:004683623-004683667 Unknown NC_000073.4[004683623..004683667]
15 GTGTGTGGGGAGAATATCGCTAGAGGCTCATCGTGTATTTTCCATCTGTT A_68_P21121869 chr2:033311908-033311957 chr2:033311908-033311957 Unknown NC_000068.5[033311908..033311957]
16 AGAGCTATTTTTGCGTACTTATACATTATTGATTGCCAAACTCAAAAGAACACTATGGCA A_68_P22399582 chr3:105976652-105976711 chr3:105976652-105976711 Unknown NC_000069.4[105976652..105976711]
17 TTGGGGAAATTCCGCTTATTCTTCTTCTTCTGCAACTTGTTATTCCGAGGAG A_68_P21426807 chr2:091986043-091986094 chr2:091986043-091986094 Unknown NC_000068.5[091986043..091986094]
18 AACCTAGTTTCTTTAAACTATTTCATTGCACTTGTTTGTTCATTTATATTTGGGAAGGGC A_68_P24098866 chr5:131848198-131848257 chr5:131848198-131848257 Unknown NC_000071.4[131848198..131848257]
19 GCTGGGGTGATGGGGCGCGCGGCGCGAAGGGGCGCACTTACTAAT A_68_P32839897 chr1:135251381-135251425 chr1:135251381-135251425 Unknown NC_000067.4[135251381..135251425]
20 TGGGCAGATATTAGAGTCTAGAGAAAATTCTTCATGGTGATAAAATATCACAGAGGACTG A_68_P26292442 chr9:008586018-008586077 chr9:008586018-008586077 Unknown NC_000075.4[008586018..008586077]
21 GTCTATTAGCCATGAAAATACCCAAAGCAAGTAATGACAAAAAAAATCCAGCCAACCTGC A_68_P25717392 chr8:025061564-025061623 chr8:025061564-025061623 Unknown NC_000074.4[025061564..025061623]
22 CTTGGTTAGCCTGAAAGCAGCCGTTCCCCAGACCCTGAATGTGTA A_68_P25727624 chr8:027004038-027004082 chr8:027004038-027004082 Unknown NC_000074.4[027004038..027004082]

Total number of rows: 96645

Table truncated, full table size 15240 Kbytes.




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