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Platform GPL8940 Query DataSets for GPL8940
Status Public on Nov 04, 2009
Title [mjay] Custom Affymetrix Mouse Exon Junction Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's website
 
 
Web link http://www.affymetrix.com/support/index.affx
Submission date Jul 28, 2009
Last update date Jan 17, 2013
Contact name Donny D Licatalosi
Organization name Case Western Reserve University
Lab Licatalosi
Street address 10900 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Samples (18) GSM434144, GSM434145, GSM434146, GSM434147, GSM434148, GSM434149 
Series (5)
GSE12965 Wild type vs. Nova2 KO mouse P10 cortex RNA
GSE17376 Wild type vs. Nova2 KO mouse: Exon junction array data
GSE22758 Wild type vs. Nova2 KO mouse E14.5 cortex RNA

Data table header descriptions
ID
Index
TC_Chromosome
TC_Transcript_Cluster
TC_Genomic_Position
Strand
GeneIDs_ENSMUSG
GIs
Gene_Symbols
Descriptions
Probeset_Target_Sequence
SPOT_ID

Data table
ID Index TC_Chromosome TC_Transcript_Cluster TC_Genomic_Position Strand GeneIDs_ENSMUSG GIs Gene_Symbols Descriptions Probeset_Target_Sequence SPOT_ID
JUC0100000003 608958 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc|ccctgtgatgccagtcacattaaatatgaatatggctatgccttcttg TC0100004 (exon junction)
JUC0100000010 385940 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gtgtcactgcactcagttgctggcttccacttcgggcttcgttttcacag|gggccgatcaacagtgctaatcgagatatttccgttctccagtgccatgg TC0100004 (exon junction)
JUC0100000025 180511 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gttattttccttcacggattgggagatacagg|gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaat TC0100004 (exon junction)
JUC0100000033 143356 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) tgaagaatggcattccttctaacaggattattttgggaggattttctcag|gggccgatcaacagtgctaatcgagatatttccgttctccagtgccatgg TC0100004 (exon junction)
JUC0100000037 373072 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc|gtttgatatcgttggactttcaccagattcccaggaagatgaatctggaa TC0100004 (exon junction)
JUC0100000051 131516 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) tgaagaatggcattccttctaacaggattattttgggaggattttctcag|ggaggcgccttgtctttatacactgctctcaccacacagcagaaactggc TC0100004 (exon junction)
JUC0100000054 5704 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) accagattcccaggaagatgaatctggaattaaacaggcagcagaaaccg|taaaagccttgatagatcaagaagtgaagaatggcattccttctaacagg TC0100004 (exon junction)
JUC0100000055 240916 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) ccgctccgatgcccgccgttgtgccggccgcccggaaggccaccgccgcg|gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaat TC0100004 (exon junction)
JUC0100000057 175961 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) ccgctccgatgcccgccgttgtgccggccgcccggaaggccaccgccgcg|gttattttccttcacggattgggagatacagg TC0100004 (exon junction)
JUC0100000058 179936 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) ccctgtgatgccagtcacattaaatatgaatatggctatgccttcttg|gtttgatatcgttggactttcaccagattcccaggaagatgaatctggaa TC0100004 (exon junction)
JUC0100000068 430195 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) atgtaaccttcaaaatctatgaaggcatgatgcacagctcatgtcagcag|gaaatgatggatgtcaagcacttcattgataagctcctacctccaattga TC0100004 (exon junction)
PSR010000006 337375 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gttattttccttcacggattgggagatacagg TC0100004 (exon)
PSR010000007 206463 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc TC0100004 (exon)
PSR010000008 495860 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) ccctgtgatgccagtcacattaaatatgaatatggctatgccttcttg TC0100004 (exon)
PSR010000009 278932 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gtttgatatcgttggactttcaccagattcccaggaagatgaatctggaattaaacaggcagcagaaaccg TC0100004 (exon)
PSR010000011 178842 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) taaaagccttgatagatcaagaagtgaagaatggcattccttctaacaggattattttgggaggattttctcag TC0100004 (exon)
PSR010000013 553501 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) ggaggcgccttgtctttatacactgctctcaccacacagcagaaactggctggtgtcactgcactcagttgctggcttccacttcgggcttcgttttcacag TC0100004 (exon)
PSR010000016 224001 chr1 TC0100004 4803454_4914291 + ENSMUSG00000025903 GI:31543132 Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) gaaatgatggatgtcaagcacttcattgataagctcctacctccaattgattgacatcactaagaggccttgagtagaagttcaccagcatcacagtagtagagtataaacctcttcccatgactgaccatagaacttctaatgtgtgcagtgttaaaatgttttgcaaatacataccaatgatacagactaaatgatgttaccctcatgggaaatatatgatccttttaagtgtctatgcatatatttgtattatacaattcagaatatactaagtattacagtaggtaagtgaagcaactagattctttgtctcaaattcagcaaaataagataacaaacagttttattacatcatttgaaaattactagtatgttctgtgaagatgtgttcaggtaagatgtaagtgacttcttagttctgtgagttagactatagttttactccacaattgttcagtctccatgcagtgtctgtatttttctgtttgtattcacatagatgatactataatagctaagaatcagatggtattacattatccctaataatggggataatgcttttgagtgtcaaaaagtaatactgcattcttcaattaatggcccttctattgggagaccaggctttttttcccttctatgtaatttttctcaagaaaaaacaaggttcttttttgattttccgtagaaaactaatattgcctctctgtcatatattttattttgacattttgagatacagacatagccgggcgtggtggtgcatgcctttaatcccagcactcgggaggcagaggcaggcggatctctgtcaatagcctggtccacagagtgagttccaggacagccagggctacacagagaaaccctgtctcg TC0100004 (exon)
JUC0100000070 91666 chr1 TC0100005 4853395_4893494 + ENSMUSG00000033813 GI:40254396 MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) tgtgcgattaaaatgtagggagatgcttgctgcagctcttcggacaggag|atgattatgttgcaattggagctgatgaagaagaactgggatctcagatt TC0100005 (exon junction)
JUC0100000074 116089 chr1 TC0100005 4853395_4893494 + ENSMUSG00000033813 GI:40254396 MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) tggttcgcattgccaagaagatggacaaaatggtgcagaaaaagaatgcg|gctggcgcattggatttgctgaaagagcttaagaatattcccatgaccct TC0100005 (exon junction)

Total number of rows: 314489

Table truncated, full table size 102400 Kbytes.




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Supplementary file Size Download File type/resource
GPL8940_mjay.r1.clf.gz 29.5 Mb (ftp)(http) CLF
GPL8940_mjay.r1.pgf.gz 110.8 Mb (ftp)(http) PGF

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