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Platform GPL8594 Query DataSets for GPL8594
Status Public on May 26, 2009
Title UTSW-Ambion mirVana Probe Set custom array
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer University of Texas Southwest Medical Center Microarray Core Facility
Manufacture protocol The oligo set consisted of the mirVana miRNA Probe Set, a collection of amine-modified DNA oligonucleotides targeting a comprehensive selection of human, mouse, and rat miRNAs from miRBase, purchased from Ambion.
The probes in the mirVana miRNA Probe Set are 42-46 nucleotides (nt) long and consist of an 18-24 nt segment that targets a specific known human, mouse, or rat miRNA, plus spacer and attachment sequences for coupling to the surface of the microarray slide.
The oligo set was printed on SCHOTT Nexterion Slide E microarray slides with 6 replicated spots for each probe.
 
Description The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record.
 
Submission date May 26, 2009
Last update date May 26, 2009
Contact name Scott Andrew Ochsner
E-mail(s) [email protected]
Phone 713-798-6227
Organization name Baylor College of Medicine
Department Molecular and Cellular Biology
Lab SPP: Signaling Pathways Project
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Samples (3) GSM408737, GSM408738, GSM408739
Series (1)
GSE16229 Detection of microRNA expression during 3T3-L1 pre-adipocyte differentiation using a custom made microarray chip.

Data table header descriptions
ID
Name probe name
Human Mature Sanger Registry Name Human Sanger Registry Name of oligonucleotide used to design probe
Human Sanger Accession Number(s) Human Sanger accession number of oligonucleotide used to design probe
Mouse Mature Sanger Registry Name Mouse Sanger Registry Name of oligonucleotide used to design probe
Mouse Sanger Accession Number(s) Mouse Sanger accession number of oligonucleotide used to design probe
Rat Mature Sanger Registry Name Rat Sanger Registry Name of oligonucleotide used to design probe
Rat Sanger Accession Number(s) Rat Sanger accession number of oligonucleotide used to design probe
SEQUENCE Mature miRNA Sequence; oligonucleotide sequence used to design probe
miRNA_LIST miRNA name(s)
SPOT_ID control

Data table
ID Name Human Mature Sanger Registry Name Human Sanger Accession Number(s) Mouse Mature Sanger Registry Name Mouse Sanger Accession Number(s) Rat Mature Sanger Registry Name Rat Sanger Accession Number(s) SEQUENCE miRNA_LIST SPOT_ID
PS20001 Control_1 NA NA NA NA NA NA CONTROL
PS20002 Control_2 NA NA NA NA NA NA CONTROL
PS20003 Control_3 NA NA NA NA NA NA CONTROL
PS20004 Control_4 NA NA NA NA NA NA CONTROL
PS20101 hsa_let_7a hsa-let-7a MIMAT0000062 NA NA rno-let-7a MIMAT0000774 UGAGGUAGUAGGUUGUAUAGUU hsa-let-7a, rno-let-7a
PS20102 hsa_let_7b hsa-let-7b MIMAT0000063 mmu-let-7b MIMAT0000522 rno-let-7b MIMAT0000775 UGAGGUAGUAGGUUGUGUGGUU hsa-let-7b, mmu-let-7b, rno-let-7b
PS20103 hsa_let_7c hsa-let-7c MIMAT0000064 mmu-let-7c MIMAT0000523 rno-let-7c MIMAT0000776 UGAGGUAGUAGGUUGUAUGGUU hsa-let-7c, mmu-let-7c, rno-let-7c
PS20104 hsa_let_7d hsa-let-7d MIMAT0000065 mmu-let-7d MIMAT0000383 rno-let-7d MIMAT0000562 AGAGGUAGUAGGUUGCAUAGU hsa-let-7d, mmu-let-7d, rno-let-7d
PS20105 hsa_let_7e hsa-let-7e MIMAT0000066 mmu-let-7e MIMAT0000524 rno-let-7e MIMAT0000777 UGAGGUAGGAGGUUGUAUAGU hsa-let-7e, mmu-let-7e, rno-let-7e
PS20106 hsa_let_7f hsa-let-7f MIMAT0000067 NA NA rno-let-7f MIMAT0000778 UGAGGUAGUAGAUUGUAUAGUU hsa-let-7f, rno-let-7f
PS20107 hsa_let_7g hsa-let-7g MIMAT0000414 mmu-let-7g MIMAT0000121 NA NA UGAGGUAGUAGUUUGUACAGU hsa-let-7g, mmu-let-7g
PS20108 hsa_let_7i hsa-let-7i MIMAT0000415 mmu-let-7i MIMAT0000122 rno-let-7i MIMAT0000779 UGAGGUAGUAGUUUGUGCUGU hsa-let-7i, mmu-let-7i, rno-let-7i
PS20109 hsa_miR_1 hsa-miR-1 MIMAT0000416 mmu-miR-1 MIMAT0000123 NA NA UGGAAUGUAAAGAAGUAUGUA hsa-miR-1, mmu-miR-1
PS20110 hsa_miR_100 hsa-miR-100 MIMAT0000098 mmu-miR-100 MIMAT0000655 rno-miR-100 MIMAT0000822 AACCCGUAGAUCCGAACUUGUG hsa-miR-100, mmu-miR-100, rno-miR-100
PS20111 hsa_miR_101 hsa-miR-101 MIMAT0000099 mmu-miR-101a MIMAT0000133 rno-miR-101a MIMAT0000823 UACAGUACUGUGAUAACUGAAG hsa-miR-101, mmu-miR-101a, rno-miR-101a
PS20112 hsa_miR_103 hsa-miR-103 MIMAT0000101 mmu-miR-103 MIMAT0000546 rno-miR-103 MIMAT0000824 AGCAGCAUUGUACAGGGCUAUGA hsa-miR-103, mmu-miR-103, rno-miR-103
PS20113 hsa_miR_105 hsa-miR-105 MIMAT0000102 NA NA NA NA UCAAAUGCUCAGACUCCUGU hsa-miR-105
PS20114 hsa_miR_106a hsa-miR-106a MIMAT0000103 NA NA NA NA AAAAGUGCUUACAGUGCAGGUAGC hsa-miR-106a
PS20115 hsa_miR_106b hsa-miR-106b MIMAT0000680 mmu-miR-106b MIMAT0000386 rno-miR-106b MIMAT0000825 UAAAGUGCUGACAGUGCAGAU hsa-miR-106b, mmu-miR-106b, rno-miR-106b
PS20116 hsa_miR_107 hsa-miR-107 MIMAT0000104 mmu-miR-107 MIMAT0000647 rno-miR-107 MIMAT0000826 AGCAGCAUUGUACAGGGCUAUCA hsa-miR-107, mmu-miR-107, rno-miR-107

Total number of rows: 381

Table truncated, full table size 43 Kbytes.




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Supplementary file Size Download File type/resource
GPL8594_microRNA_20051020.gal.gz 9.7 Kb (ftp)(http) GAL

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