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Platform GPL7732 Query DataSets for GPL7732
Status Public on Dec 03, 2008
Title Agilent-019119 Mouse miRNA Microarray 1.0 G4472A
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4472A
 
Description
Agilent Mouse miRNA Microarray 8x15K (G4472A) annotated against the Sanger miRBASE 12.0 database of miRNAs. The microarray is designed to contain probes specific for each of the mouse miRNAs in Sanger miRBASE 10.1, as well as probes specific to the mouse viral miRNAs in this database.

Arrays of this design have barcodes that begin with 16019119 or 2519119.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Dec 03, 2008
Last update date Dec 03, 2008
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (138) GSM426418, GSM426419, GSM426420, GSM426421, GSM426422, GSM426423 
Series (19)
GSE17035 microRNA microarray profiling in the livers of control db/+ and diabetic db/db mice
GSE17977 miRNA profiles of adipocyte-derived microvesicles (ADMs)
GSE18786 MicroRNA expression profiling in adult mouse liver following benzo(a)pyrene (BaP) treatment [Agilent miRNA array]
Relations
Alternative to GPL8824

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
miRNA_ID
PROBE NAME Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SPOT_ID

Data table
ID COL ROW miRNA_ID PROBE NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SPOT_ID
1 96 164 miRNABrightCorner30 pos CONTROL
2 96 162 DarkCorner pos CONTROL
3 96 160 NA ignore -- ignore
4 96 158 NA ignore -- ignore
5 96 156 mghv-miR-M1-7-3p A_54_P2238 FALSE mir|mghv-miR-M1-7-3p|mir|MIMAT0001571 unmapped NA
6 96 154 mmu-miR-471 A_54_P2781 FALSE mir|mmu-miR-471|mir|MIMAT0002112 chrX:064045797-064045776 NA
7 96 152 mmu-miR-671-3p A_54_P2870 FALSE mir|mmu-miR-671-3p|mir|MIMAT0004821 chr5:024098000-024098009 NA
8 96 150 mmu-miR-384-3p A_54_P2698 FALSE mir|mmu-miR-384-3p|mir|MIMAT0001076 chrX:102539698-102539680 NA
9 96 148 mmu-miR-197 A_54_P3063 FALSE mir|mmu-miR-197|mir|MIMAT0004860 unmapped NA
10 96 146 mmu-miR-27a* A_54_P3469 FALSE mir|mmu-miR-27a*|mir|MIMAT0004633 chr8:086732592-086732605 NA
11 96 144 mmu-miR-678 A_54_P1917 FALSE mir|mmu-miR-678|mir|MIMAT0003452 chr10:075670147-075670136 NA
12 96 142 mmu-miR-96 A_54_P1331 FALSE mir|mmu-miR-96|mir|MIMAT0000541 chr6:030119491-030119471 NA
13 96 140 mmu-miR-297b-5p A_54_P2928 FALSE mir|mmu-miR-297b-5p|mir|MIMAT0003480 chr2:010433317-010433334 NA
14 96 138 mmu-miR-26b A_54_P2484 FALSE mir|mmu-miR-26b|mir|MIMAT0000534 chr1:074440899-074440918 NA
15 96 136 mmu-miR-709 A_54_P2098 FALSE mir|mmu-miR-709|mir|MIMAT0003499 chr8:086610074-086610084 NA
16 96 134 mmu-miR-693-3p A_54_P1998 FALSE mir|mmu-miR-693-3p|mir|MIMAT0004189 chr17:046368538-046368552 NA
17 96 132 mmu-miR-196b A_54_P2703 FALSE mir|mmu-miR-196b|mir|MIMAT0001081 chr6:052180116-052180098 NA
18 96 130 NA ignore -- ignore
19 96 128 mmu-let-7e A_54_P2469 FALSE mir|mmu-let-7e|mir|MIMAT0000524 chr17:017967333-017967351 NA
20 96 126 mmu-miR-700 A_54_P2063 FALSE mir|mmu-miR-700|mir|MIMAT0003490 chr4:134972542-134972529 NA

Total number of rows: 15744

Table truncated, full table size 1340 Kbytes.




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