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Platform GPL6087 Query DataSets for GPL6087
Status Public on Nov 08, 2007
Title Agilent-012097 Human 1A Microarray (V2) G4110B - alternative version
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4110B
 
Description This is an alternative version of the official Agilent platform assigned accession number GPL887. The ID column includes the Agilent probe identifiers instead of the Agilent feature IDs.
Agilent's Human 1A Oligo Microarray (V2) includes over 20K 60-mer oligonucleotide probes, sourced from the Incyte Foundation Database, RefSeq, and GenBank, and are designed to span conserved exons across the transcripts of the targeted full length genes. Coupled with Agilent's probe selection and validation processes, this design method gives the customer maximum confidence in data quality and prevents redundancy in gene coverage.
 
Citation(s) 19549813
Submission date Nov 06, 2007
Last update date Sep 24, 2009
Contact name Min Ok Song
E-mail(s) [email protected]
Phone 919-541-2679
Fax 919-541-5737
Organization name NIEHS
Department DIR ETP
Lab LTEG
Street address 111 T.W. Alexander Dr
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Samples (106) GSM241451, GSM241452, GSM241453, GSM241454, GSM241455, GSM241456 
Series (3)
GSE9539 Global transcriptome changes in HepG2 cells exposed to copper
GSE21391 Comparison of gene expression between a human epididymal cell line derived from the caput epididymidis of a fertile patient and another one derived from the caput epididymidis of an obstructive azoospermic patient
GSE34485 Microarray analysis of human bone metastases samples

Data table header descriptions
ID
CONTROL_TYPE
REFSEQ
GB_ACC GenBank Accession number
GENE Entrez GENE ID
GENE_SYMBOL
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
TIGR_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
SPOT_ID

Data table
ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
A_23_P100001 FALSE NM_207446 NM_207446 400451 LOC400451 hypothetical gene supported by AK075564; BC060873 Hs.27373 ENST00000327355 THC2295302 ref|NM_207446|ens|ENST00000327355|gb|CR606671|gb|AK075564 chr15:90961852-90961793 hs|15q26.1 Homo sapiens hypothetical gene supported by AK075564; BC060873 (LOC400451), mRNA [NM_207446] ATCTCATGGAAAAGCTGGATTCCTCTGCCTTACGCAGAAACACCCGGGCTCCATCTGCCA
A_23_P100011 FALSE NM_005829 NM_005829 10239 AP3S2 adaptor-related protein complex 3, sigma 2 subunit Hs.632161 ENST00000336418 NP1156781 ref|NM_005829|ens|ENST00000336418|ens|ENST00000357484|ens|ENST00000379137 chr15:88179747-88179688 hs|15q26.1 Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA [NM_005829] GO:0006886(intracellular protein transport)|GO:0030125(clathrin vesicle coat) TCAAGTATTGGCCTGACATAGAGTCCTTAAGACAAGCAAAGACAAGCAAGGCAAGCACGT
A_23_P10002 FALSE NM_025180 NM_025180 80254 CEP63 centrosomal protein 63kDa Hs.443301 ENST00000337090 THC2262445 ref|NM_025180|ref|NM_001042383|ref|NM_001042400|ens|ENST00000337090 chr3:135762958-135763017 hs|3q22.1 Homo sapiens centrosomal protein 63kDa (CEP63), transcript variant 1, mRNA [NM_025180] GO:0005515(protein binding)|GO:0005813(centrosome) ATTTTTGGAAGAGGAGGAACTGAGGTCTCATCACATTCTAGAGCGCTTGGATGCCCATAT
A_23_P100022 FALSE NM_014848 NM_014848 9899 SV2B synaptic vesicle glycoprotein 2B Hs.592018 ENST00000330276 THC2247620 ref|NM_014848|ens|ENST00000330276|gb|AB018278|gb|BC030011 chr15:89639333-89639392 hs|15q26.1 Homo sapiens synaptic vesicle glycoprotein 2B (SV2B), mRNA [NM_014848] GO:0005215(transporter activity)|GO:0006836(neurotransmitter transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0045202(synapse) ATGTCGGCTGTGGAGGGTTAAAGGGATGAGGCTTTCCTTTGTTTAGCAAATCTGTTCACA
A_23_P100033 FALSE NM_001004719 NM_001004719 390538 OR4M2 olfactory receptor, family 4, subfamily M, member 2 Hs.525666 ENST00000332663 THC2437520 ref|NM_001004719|ref|NM_001005500|ens|ENST00000332663|ens|ENST00000315957 chr15:19870171-19870230 hs|15q11.2 Homo sapiens olfactory receptor, family 4, subfamily M, member 2 (OR4M2), mRNA [NM_001004719] GO:0004872(receptor activity)|GO:0004984(olfactory receptor activity)|GO:0007165(signal transduction)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0007608(sensory perception of smell)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0050896(response to stimulus) GCCCCTGAAATGCTCATAGACTTCTTTGTGGAGAGGAAGATAATTTCTTTTGATGGATGC
A_23_P100059 FALSE NM_194272 NM_194272 348093 RBPMS2 RNA binding protein with multiple splicing 2 Hs.436518 ENST00000300069 THC2238587 ref|NM_194272|ens|ENST00000300069|gb|AK127873|gb|AK124123 chr15:62819488-62819429 hs|15q22.31 Homo sapiens RNA binding protein with multiple splicing 2 (RBPMS2), mRNA [NM_194272] TTATGCATCATAAAGGATTTTTCATGTGCGTACCATTAATTATTAAAGCGACCTCGTTCG
A_23_P100065 FALSE NM_018652 NM_018652 55889 GOLGA golgin-like protein Hs.546408 ENST00000268079 THC2262136 ref|NM_018652|ref|NM_001038640|gb|AF263742|ens|ENST00000268079 chr15:70745077-70745216 hs|15q24.1 Homo sapiens golgin-like protein (GOLGA), mRNA [NM_018652] ATCGTGACAGACGGCATGAGAGAGTCCTTCACCGTATATGAAAGCCAGGGGGCAGTGCCA
A_23_P100074 FALSE NM_020371 NM_020371 57099 AVEN apoptosis, caspase activation inhibitor Hs.555966 ENST00000306730 THC2247974 ref|NM_020371|ens|ENST00000306730|gb|CR618548|gb|CR619789 chr15:31946031-31945972 hs|15q14 Homo sapiens apoptosis, caspase activation inhibitor (AVEN), mRNA [NM_020371] GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005624(membrane fraction)|GO:0006915(apoptosis)|GO:0006916(anti-apoptosis) GACCAGCCAGTTTACAAGCATGTCTCAAGCTAGTGTGTTCCATTATGCTCACAGCAGTAA
A_23_P100088 FALSE NM_002789 NM_002789 5685 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 Hs.251531 ENST00000044462 NP537623 ref|NM_002789|gb|BC005361|gb|CR610985|ens|ENST00000044462 chr15:76628463-76628522 hs|15q25.1 Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 4 (PSMA4), mRNA [NM_002789] GO:0004298(threonine endopeptidase activity)|GO:0005829(cytosol)|GO:0005839(proteasome core complex (sensu Eukaryota))|GO:0006511(ubiquitin-dependent protein catabolism) TGAATTGGGTCCTTGTCATTTCTGTCCAATTGAATACTTTATTGTAACGATGATGGTTAC
A_23_P100092 FALSE NM_152455 NM_152455 146050 ZNF690 zinc finger protein 690 Hs.418287 ENST00000267817 THC2239235 ref|NM_152455|gb|BC109270|gb|AK122788|gb|AK093377 chr15:41440680-41440621 hs|15q15.3 Homo sapiens zinc finger protein 690 (ZNF690), mRNA [NM_152455] GO:0003700(transcription factor activity)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100103 FALSE NM_015289 NM_015289 23339 VPS39 vacuolar protein sorting 39 (yeast) Hs.88025 ENST00000318006 NP372126 ref|NM_015289|ens|ENST00000318006|ens|ENST00000348544|gb|AF280814 chr15:40240319-40240260 hs|15q15.1 Homo sapiens vacuolar protein sorting 39 (yeast) (VPS39), mRNA [NM_015289] GO:0005083(small GTPase regulator activity)|GO:0015031(protein transport) TGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAA
A_23_P100115 FALSE NM_007236 NM_007236 11261 CHP calcium binding protein P22 Hs.406234 ENST00000334660 NP089677 ref|NM_007236|ens|ENST00000334660|gb|CR542085|gb|CR536539 chr15:39358319-39358378 hs|15q15.1 Homo sapiens calcium binding protein P22 (CHP), mRNA [NM_007236] GO:0005509(calcium ion binding)|GO:0006813(potassium ion transport)|GO:0007264(small GTPase mediated signal transduction)|GO:0015459(potassium channel regulator activity) GACCATTCAGGAGGCTGATCAGGATGGGGACAGTGCCATATCTTTCACAGAATTTGTTAA
A_23_P100127 FALSE NM_170589 NM_170589 57082 CASC5 cancer susceptibility candidate 5 Hs.181855 ENST00000346991 THC2238819 ref|NM_170589|ref|NM_144508|gb|AF248041|ens|ENST00000346991 chr15:38704817-38704876 hs|15q15.1 Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589] GO:0001669(acrosome)|GO:0001675(acrosome formation)|GO:0005634(nucleus) CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100133 FALSE NM_015251 NM_015251 23300 ASCIZ ATM/ATR-Substrate Chk2-Interacting Zn2+finger protein Hs.16349 ENST00000299575 THC2244254 ref|NM_015251|ens|ENST00000299575|gb|AB007891|gb|CR749457 chr16:79636596-79636655 hs|16q23.2 Homo sapiens ATM/ATR-Substrate Chk2-Interacting Zn2+finger protein (ASCIZ), mRNA [NM_015251] TGGACCTTCGTCAGCTTTGACACCTCTTTTCTGATTTAAAGACACCAAGGAAAACTACAA
A_23_P100141 FALSE NM_023076 NM_023076 65259 C16orf28 chromosome 16 open reading frame 28 Hs.161279 ENST00000248104 THC2253025 ref|NM_023076|gb|AK022685|gb|AK027013|ens|ENST00000248104 chr16:1355346-1355287 hs|16p13.3 Homo sapiens chromosome 16 open reading frame 28 (C16orf28), mRNA [NM_023076] AGCAGAGGGGATCCAACGTCAGAGCTTTTAGAATTACTTTTTTAAGCAGCTGTCTTCTGG
A_23_P100155 FALSE NM_017849 NM_017849 55654 TMEM127 transmembrane protein 127 Hs.355708 ENST00000258439 THC2235127 ref|NM_017849|gb|BC028575|gb|AK025910|ens|ENST00000258439 chr2:96339998-96339939 hs|2q11.2 Homo sapiens transmembrane protein 127 (TMEM127), mRNA [NM_017849] AACCTGTCCTTGTTAAGTTACTTGCTTCTTGGGAATCAGTGTCCCCTGCTGAGCTGAAAA
A_23_P100177 FALSE NM_002428 NM_002428 4324 MMP15 matrix metallopeptidase 15 (membrane-inserted) Hs.80343 ENST00000219271 THC2314521 ref|NM_002428|gb|BC036495|gb|CR596713|ens|ENST00000219271 chr16:56637027-56637086 hs|16q13 Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA [NM_002428] GO:0000270(peptidoglycan metabolism)|GO:0004222(metalloendopeptidase activity)|GO:0005509(calcium ion binding)|GO:0005578(extracellular matrix (sensu Metazoa))|GO:0005887(integral to plasma membrane)|GO:0006464(protein modification)|GO:0006508(proteolysis)|GO:0008047(enzyme activator activity)|GO:0008270(zinc ion binding)|GO:0016020(membrane) GACCATTTGTTTCTGTTTCCCCGACTGGGGCAGGGTGTTTAGAATTTTCTAAATGTAGTT
A_23_P100189 FALSE NM_002761 NM_002761 5619 PRM1 protamine 1 Hs.2909 ENST00000312511 THC2372338 ref|NM_002761|ens|ENST00000312511|gb|CR612045|gb|Y00443 chr16:11282363-11282304 hs|16p13.13 Homo sapiens protamine 1 (PRM1), mRNA [NM_002761] GO:0000786(nucleosome)|GO:0003677(DNA binding)|GO:0005634(nucleus)|GO:0005654(nucleoplasm)|GO:0005694(chromosome)|GO:0006323(DNA packaging)|GO:0007001(chromosome organization and biogenesis (sensu Eukaryota))|GO:0007076(mitotic chromosome condensation)|GO:0007283(spermatogenesis)|GO:0030154(cell differentiation) GTAGAAGACACTAATTGCACAAAATAGCACATCCACCAAACTCCTGCCTGAGAATGTTAC
A_23_P100196 FALSE NM_005153 NM_005153 9100 USP10 ubiquitin specific peptidase 10 Hs.136778 ENST00000219473 THC2374387 ref|NM_005153|gb|CR749515|ens|ENST00000219473|ens|ENST00000378510 chr16:83370332-83370391 hs|16q24.1 Homo sapiens ubiquitin specific peptidase 10 (USP10), mRNA [NM_005153] GO:0004197(cysteine-type endopeptidase activity)|GO:0004221(ubiquitin thiolesterase activity)|GO:0006511(ubiquitin-dependent protein catabolism)|GO:0006512(ubiquitin cycle) TTGGGGTTCGTGCACAACACAGCTTCTGTTGACTCTAACTTCCAAATCAAAATCATTTGG
A_23_P100203 FALSE NM_001537 NM_001537 3281 HSBP1 heat shock factor binding protein 1 Hs.250899 NP1072447 ref|NM_001537|gb|CR626052|gb|CR608180|gb|CR623333 chr16:82403745-82403804 hs|16q23.3 Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA [NM_001537] GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0003714(transcription corepressor activity)|GO:0005634(nucleus) ACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCAC

Total number of rows: 20228

Table truncated, full table size 10244 Kbytes.






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