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Platform GPL5109 Query DataSets for GPL5109
Status Public on Apr 20, 2007
Title University of Pennsylvania/Nathanson Lab_HomoSapiens_5217 unique BACS_FGA061005
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Nathanson Laboratory/School of Medicine/University of Pennsylvania
Manufacture protocol This BAC array platform consisted of 5217unique BACs spotted in-house on CorningCMT Ultra-Gap slides (Corning, USA) using two replicates printed on each slide. Details of array construction are described elsewhere (Greshock et al., 2004)
Greshock J, Naylor TL, Margolin A, Diskin S, Cleaver SH, Futreal PA, deJong PJ, Zhao S, Liebman M, Weber BL. 2004. 1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis. Genome Res 14(1):179-87.
Support glass
Coating other
 
Description Ultra GAPS (Gama Amino Propyl Silane)
 
Web link http://www.genome.org/cgi/content/abstract/14/1/179
Citation(s) 14672980
Submission date Apr 19, 2007
Last update date Feb 05, 2008
Contact name Carmen Elisa Oquendo
E-mail(s) [email protected]
Organization name University of Pennsylvania
Street address 421 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19119
Country USA
 

Data table header descriptions
ID
Block Replciate A
Block Replicate B
Row
Column
Chromosome
Start
End
Mapping Method
CLONE_ID

Data table
ID Block Replciate A Block Replicate B Row Column Chromosome Start End Mapping Method CLONE_ID
RP11-71L20 1 2 1 2 chr1 149546976 149691956 BAC_end_UCSC_Hg18_NCBI36.1 RP11-71L20
RP11-501A10 1 2 1 3 chr10 3813423 3813761 STS_Map_Hg18_NCBI36.1 RP11-501A10
RP11-330C23 1 2 1 4 chr10 34438573 34438696 UCSC_STS_Mapped_Hg18_NCBI36.1 RP11-330C23
RP11-424F11 1 2 1 5 chr2 8677852 8825151 Sanger_BAC_end_Hg18_NCBI36.1 RP11-424F11
RP11-309F8 1 2 1 6 chr2 36610548 36774704 BAC_end_UCSC_Hg18_NCBI36.1 RP11-309F8
RP11-524P14 1 2 1 7 chr10 8052311 8228989 BAC_end_UCSC_Hg18_NCBI36.1 RP11-524P14
RP11-500O4 1 2 1 8 chr10 44100163 44271702 BAC_end_UCSC_Hg18_NCBI36.1 RP11-500O4
RP11-509D1 1 2 1 9 chr15 58747456 58747784 STS_Map_Hg18_NCBI36.1 RP11-509D1
RP11-354M13 1 2 1 10 chr15 89493061 89668552 BAC_end_UCSC_Hg18_NCBI36.1 RP11-354M13
RP11-454I4 1 2 1 11 chr19 12785138 12785288 UCSC_STS_Mapped_Hg18_NCBI36.1 RP11-454I4
RP11-541B22 1 2 1 12 chr19 44061058 44061255 STS_Map_Hg18_NCBI36.1 RP11-541B22
RP11-385E19 1 2 1 13 chr15 74427658 74427909 STS_Map_Hg18_NCBI36.1 RP11-385E19
RP11-363O10 1 2 1 14 chr15 94684268 94684409 UCSC_STS_Mapped_Hg18_NCBI36.1 RP11-363O10
RP11-433F8 1 2 1 15 chr19 20549365 20716427 BAC_end_UCSC_Hg18_NCBI36.1 RP11-433F8
RP11-531J9 1 2 1 16 chr2 217983460 218142229 BAC_end_UCSC_Hg18_NCBI36.1 RP11-531J9
RP11-558C17 1 2 2 1 chr4 21129110 21129258 UCSC_STS_Mapped_Hg18_NCBI36.1 RP11-558C17
RP11-521J23 1 2 2 2 chr4 56332185 56509234 BAC_end_UCSC_Hg18_NCBI36.1 RP11-521J23
RP11-289P9 1 2 2 3 chr5 111064911 111253881 BAC_end_UCSC_Hg18_NCBI36.1 RP11-289P9
RP11-523P24 1 2 2 4 chr5 148549261 148719847 BAC_end_UCSC_Hg18_NCBI36.1 RP11-523P24
RP11-502B15 1 2 2 6 chr17 42414856 42612718 BAC_end_UCSC_Hg18_NCBI36.1 RP11-502B15

Total number of rows: 5217

Table truncated, full table size 429 Kbytes.




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