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Platform GPL4499 Query DataSets for GPL4499
Status Public on Dec 01, 2006
Title Human whole genome tiling array, chip 11 of 14
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
 
Contributor(s) Yang A, Zhu Z, Kapranov P, McKeon F, Church G, Gingeras T, Struhl K
Submission date Oct 25, 2006
Last update date Dec 01, 2006
Contact name Kevin Struhl
Organization name Harvard Medical School
Department Dept. Of Biological Chemistry & Molecular Pharmacology
Lab Struhl lab
Street address 240 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (6) GSM142547, GSM142548, GSM142549, GSM142937, GSM142938, GSM142939
Series (1)
GSE6132 Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

Data table header descriptions
ID
SEQUENCE
Strand
Chromosome
Coordinate Genomic coordinate, NCBI Build 35
X_PM_probe
Y_PM_probe
X_MM_probe
Y_MM_probe

Data table
ID SEQUENCE Strand Chromosome Coordinate X_PM_probe Y_PM_probe X_MM_probe Y_MM_probe
13_102700006_281_119 TGTCTTGTCTATAATGACTAATGGC t chr13 102700006 281 119 281 120
13_102700039_2264_1751 CGAAACTCCGTCTCCTTATCCTGTG t chr13 102700039 2264 1751 2264 1752
13_102700080_2031_1341 TGCCTCTAAGATGAAAACACACTTA t chr13 102700080 2031 1341 2031 1342
13_102700116_2495_221 GCTGATGGTGAACAATGTTGCTTCA t chr13 102700116 2495 221 2495 222
13_102703588_234_363 GCCAGGCACTTCAGGGTTGATACAT t chr13 102703588 234 363 234 364
13_102703624_1848_465 TAACTTACCATAGCAACAATGCAGT t chr13 102703624 1848 465 1848 466
13_102703661_2190_2369 AATGGCCGTCCTTTCTTATCACTTA t chr13 102703661 2190 2369 2190 2370
13_102703696_1076_633 TGTTAGCAAACTATGAACTCAAATG t chr13 102703696 1076 633 1076 634
13_102703732_398_2081 AAATTTTCTAACAGTTGAAGAGATC t chr13 102703732 398 2081 398 2082
13_102703770_2364_2111 AATCTCTGAATATTTAAAGTTCTAC t chr13 102703770 2364 2111 2364 2112
13_102703801_2360_2251 TTTCATGGCTAAAAAAAAGTATACA t chr13 102703801 2360 2251 2360 2252
13_102703837_1828_29 TCCCATTTCAAGACTCATGCATACT t chr13 102703837 1828 29 1828 30
13_102703884_906_1677 TACACAACACCCAGTTGCCTTGTTT t chr13 102703884 906 1677 906 1678
13_102703919_1926_1563 TTTAACTCCACCTGCTGCTTTACCT t chr13 102703919 1926 1563 1926 1564
13_102703955_573_1357 TATTGTTATTCAAAGTTACACTGTA t chr13 102703955 573 1357 573 1358
13_102703991_2163_1311 GGCCCAGATTTACTTTGTCTCATGA t chr13 102703991 2163 1311 2163 1312
13_102704027_2311_2213 CATCTTTCAGTTTTCCTCTTCGGCC t chr13 102704027 2311 2213 2311 2214
13_102704062_1078_95 GAGTGCTCAGCCCAAATCATGTCAG t chr13 102704062 1078 95 1078 96
13_102704094_191_9 AATCTCATGCCATTGAACATCTGCA t chr13 102704094 191 9 191 10
13_102704124_588_2247 TTATTTAAACTACCCAGAACTGACA t chr13 102704124 588 2247 588 2248

Total number of rows: 3317284

Table truncated, full table size 267119 Kbytes.




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Supplementary data files not provided
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