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Platform GPL4498 Query DataSets for GPL4498
Status Public on Dec 01, 2006
Title Human whole genome tiling array, chip 10 of 14
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
 
Contributor(s) Yang A, Zhu Z, Kapranov P, McKeon F, Church G, Gingeras T, Struhl K
Submission date Oct 25, 2006
Last update date Dec 01, 2006
Contact name Kevin Struhl
Organization name Harvard Medical School
Department Dept. Of Biological Chemistry & Molecular Pharmacology
Lab Struhl lab
Street address 240 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (6) GSM142544, GSM142545, GSM142546, GSM142934, GSM142935, GSM142936
Series (1)
GSE6132 Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

Data table header descriptions
ID
SEQUENCE
Strand
Chromosome
Coordinate Genomic coordinate, NCBI Build 35
X_PM_probe
Y_PM_probe
X_MM_probe
Y_MM_probe

Data table
ID SEQUENCE Strand Chromosome Coordinate X_PM_probe Y_PM_probe X_MM_probe Y_MM_probe
12_5200003_2312_2071 AAGGCATAATGTCTCTTAATAATAC t chr12 5200003 2312 2071 2312 2072
12_5200039_141_1845 TGGAAGCCTTTGCAATTCACCCCAG t chr12 5200039 141 1845 141 1846
12_5200074_270_1779 GGGAAAAGACACACCCACCATGAAG t chr12 5200074 270 1779 270 1780
12_5200110_1193_1587 GTTAGCTAACATATCTCCTCAGGGT t chr12 5200110 1193 1587 1193 1588
12_5200147_2419_1135 CCGAGTAGAATATGGTTCTGTCTCA t chr12 5200147 2419 1135 2419 1136
12_5200183_81_257 CACTGCTGGAAAGCACTTGCAGCTA t chr12 5200183 81 257 81 258
12_5200202_360_1977 GTAAAGAAAGAAAGGAGGCCACTGC t chr12 5200202 360 1977 360 1978
12_5200710_834_1155 TCTGTGTTCTGGAGTATGGTATTCA t chr12 5200710 834 1155 834 1156
12_5200739_1933_2521 AGCCAGGGAAGGAGAACTATGGCAA t chr12 5200739 1933 2521 1933 2522
12_5200774_2479_757 GCATTGTGAGCAACAGGATTTAAGG t chr12 5200774 2479 757 2479 758
12_5200813_1191_1193 CATAGGAATGAGTGGATGCCAAGGA t chr12 5200813 1191 1193 1191 1194
12_5200849_2160_1327 GGACACTTTAGTACAGACTTACATA t chr12 5200849 2160 1327 2160 1328
12_5200886_216_93 TGCAGCCTGTTGATGAATGAGGCCG t chr12 5200886 216 93 216 94
12_5200922_1646_1753 GTTTTTACAGTTCTCGACTCAGATG t chr12 5200922 1646 1753 1646 1754
12_5200961_1890_2537 TGGTCCTAAACCAAAATCTGACCAA t chr12 5200961 1890 2537 1890 2538
12_5200984_839_1733 CCAACAGACTCCATCCAAAGTTCTG t chr12 5200984 839 1733 839 1734
12_5201022_1598_1879 GTCACCTACCATAGCCAACCTAGGG t chr12 5201022 1598 1879 1598 1880
12_5201053_215_69 CAGATGCTCCCACGCTGGCTAGATG t chr12 5201053 215 69 215 70
12_5201090_282_869 CCAGAGGGAGCTGTGTGTATGCTTC t chr12 5201090 282 869 282 870
12_5201124_1879_37 TAGAATGCATGACCACAAACTCAGT t chr12 5201124 1879 37 1879 38

Total number of rows: 2911857

Table truncated, full table size 235049 Kbytes.




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Supplementary data files not provided
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