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Platform GPL4493 Query DataSets for GPL4493
Status Public on Dec 01, 2006
Title Human whole genome tiling array, chip 05 of 14
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
 
Contributor(s) Yang A, Zhu Z, Kapranov P, McKeon F, Church G, Gingeras T, Struhl K
Submission date Oct 25, 2006
Last update date Dec 01, 2006
Contact name Kevin Struhl
Organization name Harvard Medical School
Department Dept. Of Biological Chemistry & Molecular Pharmacology
Lab Struhl lab
Street address 240 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (6) GSM142529, GSM142530, GSM142531, GSM142914, GSM142916, GSM142917
Series (1)
GSE6132 Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

Data table header descriptions
ID
SEQUENCE
Strand
Chromosome
Coordinate Genomic coordinate, NCBI Build 35
X_PM_probe
Y_PM_probe
X_MM_probe
Y_MM_probe

Data table
ID SEQUENCE Strand Chromosome Coordinate X_PM_probe Y_PM_probe X_MM_probe Y_MM_probe
4_178450128_77_879 TGATAATAATGTGATAATAACCTTC t chr4 178450128 77 879 77 880
4_178450155_1442_2075 CATTTTGATTTAGATTTATGTAAAC t chr4 178450155 1442 2075 1442 2076
4_178450195_1437_1651 GCAGCAACTCTTAGGGAGTATTTTT t chr4 178450195 1437 1651 1437 1652
4_178450230_2032_93 GCAGCATCTCTTAGTTTGCTCCCAG t chr4 178450230 2032 93 2032 94
4_178450265_2251_583 GTTCACATTTGCTAATGAAACACTG t chr4 178450265 2251 583 2251 584
4_178450304_1556_143 TATTCATACATCTCACTCAGTCCTC t chr4 178450304 1556 143 1556 144
4_178450341_1080_303 GATGATACTTCATAAAACATTGAAT t chr4 178450341 1080 303 1080 304
4_178450377_1286_991 CATGTTCTTGTGATACTCTGTGGAC t chr4 178450377 1286 991 1286 992
4_178450414_635_1445 TAAGAAATCATTTTCAGCATGGGAA t chr4 178450414 635 1445 635 1446
4_178450451_1698_2321 AGTGTTACTTCTATTTTAAAGATGA t chr4 178450451 1698 2321 1698 2322
4_178450487_941_943 CTGATAAGTGATGTAAACTGCAATC t chr4 178450487 941 943 941 944
4_178450523_612_719 AATGTTTATGATATTCTGCCAGACG t chr4 178450523 612 719 612 720
4_178450558_1287_2297 GGCCCCGTCCCATTTTATTTGCAGA t chr4 178450558 1287 2297 1287 2298
4_178450598_539_2335 AAATTCGAAATTAAGCATGTTTTGA t chr4 178450598 539 2335 539 2336
4_178450629_1760_1351 TAATGTAACAATTATCTTCCTTATA t chr4 178450629 1760 1351 1760 1352
4_178450674_619_1537 TATCTGTATTAACAACACTTAACCT t chr4 178450674 619 1537 619 1538
4_178450710_2342_761 AATATTGATGTTAGAGCTTAAGAGG t chr4 178450710 2342 761 2342 762
4_178450758_1152_2463 TGAAAGGATGTAATAAAATAGAAAA t chr4 178450758 1152 2463 1152 2464
4_178450786_759_2175 AAGTCCTTATGTATATGAATATTCC t chr4 178450786 759 2175 759 2176
4_178450821_1761_2015 TAGTATCCGAATTTGGTATAGTTTC t chr4 178450821 1761 2015 1761 2016

Total number of rows: 3110356

Table truncated, full table size 245984 Kbytes.




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Supplementary data files not provided
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