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Platform GPL4492 Query DataSets for GPL4492
Status Public on Dec 01, 2006
Title Human whole genome tiling array, chip 04 of 14
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
 
Contributor(s) Yang A, Zhu Z, Kapranov P, McKeon F, Church G, Gingeras T, Struhl K
Submission date Oct 25, 2006
Last update date Dec 01, 2006
Contact name Kevin Struhl
Organization name Harvard Medical School
Department Dept. Of Biological Chemistry & Molecular Pharmacology
Lab Struhl lab
Street address 240 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (6) GSM142526, GSM142527, GSM142528, GSM142909, GSM142910, GSM142911
Series (1)
GSE6132 Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

Data table header descriptions
ID
SEQUENCE
Strand
Chromosome
Coordinate Genomic coordinate, NCBI Build 35
X_PM_probe
Y_PM_probe
X_MM_probe
Y_MM_probe

Data table
ID SEQUENCE Strand Chromosome Coordinate X_PM_probe Y_PM_probe X_MM_probe Y_MM_probe
3_162000532_2392_1503 GGCATGAATAAAAAATACTATTCCT t chr3 162000532 2392 1503 2392 1504
3_162000556_808_1707 TCTTGAAAAACTGAAGGAAAATGTG t chr3 162000556 808 1707 808 1708
3_162000587_2405_959 AGCTGTTTTTAAAATCAGTATGCAC t chr3 162000587 2405 959 2405 960
3_162000623_2090_279 TCCTGAGATAACAATAATAGACAAT t chr3 162000623 2090 279 2090 280
3_162000660_1202_2377 TAAAGGCTAAAAATGGTCACCTCTA t chr3 162000660 1202 2377 1202 2378
3_162000696_385_1269 AAGCCTCAGAAGAAATCATGTTTTA t chr3 162000696 385 1269 385 1270
3_162000742_598_2453 TGATACAATTAAAAGTTCTCTAAAA t chr3 162000742 598 2453 598 2454
3_162000775_746_725 CACACAACAGTGACCTACAGACAGG t chr3 162000775 746 725 746 726
3_162000814_1256_563 TAAGTAGAACATAGGTCTCTCCCTG t chr3 162000814 1256 563 1256 564
3_162000850_2404_1841 ATTTTGACAATAGCTGAAGGTCACG t chr3 162000850 2404 1841 2404 1842
3_162000891_2552_1853 TGCTTCTCAGAATAGGGGATTTGGG t chr3 162000891 2552 1853 2552 1854
3_162000928_2127_1387 CATGTATTTTCAATTTCTCCATTAA t chr3 162000928 2127 1387 2127 1388
3_162000959_298_2219 TAGGTTACTAAGAAAATCTACCTCA t chr3 162000959 298 2219 298 2220
3_162000995_1524_1549 CTGGCTTATGGATCCAAAACATTCT t chr3 162000995 1524 1549 1524 1550
3_162001028_1733_2201 AAAACTCAGAAGATTTCTCCCTACA t chr3 162001028 1733 2201 1733 2202
3_162001066_1415_1389 CATGCTATTCAAACAAAGAAATTAA t chr3 162001066 1415 1389 1415 1390
3_162001102_2495_1715 ATAAAAATGACCACAACTTTGGCTG t chr3 162001102 2495 1715 2495 1716
3_162001140_1351_333 CCTGGCTTGCAAGTGTAATTATCAT t chr3 162001140 1351 333 1351 334
3_162001181_768_1347 CAGCATCTTAGTTGAGAGTTTTAAA t chr3 162001181 768 1347 768 1348
3_162001216_933_795 TCAGAGGTGAAGAACCAAATGGAGC t chr3 162001216 933 795 933 796

Total number of rows: 2960773

Table truncated, full table size 235218 Kbytes.




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Supplementary data files not provided
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