GEO help: Mouse over screen elements for information.
Status
Public on Apr 01, 2006
Title
SAM3.0
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Zea mays Manufacturer
Schnable Laboratory at Iowa State University(ISU)
Manufacture protocol
The ISU microarray facility has generated a maize gene chip that contains 16,000 spotted cDNA inserts. After removing empty spots, unspecified spots, etc., 14,401 informative spots will be returned.
Contributor(s)
Schnable PS Submission date
Mar 10, 2006
Last update date
Nov 02, 2006
Contact name
Patrick S. Schnable
E-mail(s)
[email protected] Phone
515-294-0975
Organization name
Iowa State University
Street address
2035B Roy J Carver Co-Lab
City
Ames
State/province
IA
ZIP/Postal code
50011
Country
USA
Samples (252)
GSM144208 , GSM144209 , GSM144210 , GSM144226 , GSM144227 , GSM144228
GSM144229 ,
GSM144230 ,
GSM144231 ,
GSM144232 ,
GSM144233 ,
GSM144234 ,
GSM144235 ,
GSM144236 ,
GSM144237 ,
GSM144238 ,
GSM144240 ,
GSM144242 ,
GSM174733 ,
GSM174734 ,
GSM174735 ,
GSM174736 ,
GSM174737 ,
GSM174738 ,
GSM174739 ,
GSM174740 ,
GSM174741 ,
GSM174742 ,
GSM174743 ,
GSM174744 ,
GSM174745 ,
GSM174746 ,
GSM174747 ,
GSM174748 ,
GSM174749 ,
GSM174750 ,
GSM242924 ,
GSM242925 ,
GSM242926 ,
GSM242927 ,
GSM242928 ,
GSM242937 ,
GSM242938 ,
GSM242939 ,
GSM242940 ,
GSM242941 ,
GSM242942 ,
GSM242944 ,
GSM242945 ,
GSM242947 ,
GSM242948 ,
GSM242950 ,
GSM242951 ,
GSM242952 ,
GSM286066 ,
GSM286067 ,
GSM286068 ,
GSM286069 ,
GSM286070 ,
GSM286071 ,
GSM286072 ,
GSM286073 ,
GSM286074 ,
GSM286075 ,
GSM286076 ,
GSM286077 ,
GSM286078 ,
GSM286079 ,
GSM286080 ,
GSM286081 ,
GSM286082 ,
GSM286083 ,
GSM406001 ,
GSM406002 ,
GSM406003 ,
GSM406004 ,
GSM406005 ,
GSM406006 ,
GSM406007 ,
GSM406008 ,
GSM406009 ,
GSM406010 ,
GSM406011 ,
GSM406012 ,
GSM406013 ,
GSM406014 ,
GSM406015 ,
GSM406016 ,
GSM406017 ,
GSM406018 ,
GSM406019 ,
GSM406020 ,
GSM406021 ,
GSM406022 ,
GSM406023 ,
GSM406024 ,
GSM406025 ,
GSM406026 ,
GSM406027 ,
GSM406028 ,
GSM406029 ,
GSM406030 ,
GSM406031 ,
GSM406032 ,
GSM406033 ,
GSM406034 ,
GSM406035 ,
GSM406036 ,
GSM406037 ,
GSM406038 ,
GSM406039 ,
GSM406040 ,
GSM406041 ,
GSM406042 ,
GSM406043 ,
GSM406044 ,
GSM406045 ,
GSM406046 ,
GSM406047 ,
GSM406048 ,
GSM406049 ,
GSM406050 ,
GSM406051 ,
GSM406052 ,
GSM406053 ,
GSM406054 ,
GSM406055 ,
GSM406056 ,
GSM406057 ,
GSM406058 ,
GSM406059 ,
GSM406060 ,
GSM406061 ,
GSM406062 ,
GSM406063 ,
GSM406064 ,
GSM406065 ,
GSM406066 ,
GSM406067 ,
GSM406068 ,
GSM406069 ,
GSM406070 ,
GSM406071 ,
GSM406072 ,
GSM406073 ,
GSM406074 ,
GSM406075 ,
GSM406076 ,
GSM406077 ,
GSM406078 ,
GSM406079 ,
GSM406080 ,
GSM406081 ,
GSM406082 ,
GSM406083 ,
GSM406084 ,
GSM406085 ,
GSM406086 ,
GSM406087 ,
GSM406088 ,
GSM406089 ,
GSM406090 ,
GSM406091 ,
GSM406092 ,
GSM406093 ,
GSM406094 ,
GSM406095 ,
GSM406096 ,
GSM406097 ,
GSM406098 ,
GSM406099 ,
GSM406100 ,
GSM406101 ,
GSM406102 ,
GSM406103 ,
GSM406104 ,
GSM406105 ,
GSM406106 ,
GSM406107 ,
GSM406108 ,
GSM406109 ,
GSM406110 ,
GSM406111 ,
GSM406112 ,
GSM406113 ,
GSM406114 ,
GSM406115 ,
GSM406116 ,
GSM406117 ,
GSM406118 ,
GSM406119 ,
GSM406120 ,
GSM406121 ,
GSM406122 ,
GSM406123 ,
GSM406124 ,
GSM406125 ,
GSM406126 ,
GSM406127 ,
GSM406128 ,
GSM406129 ,
GSM406130 ,
GSM406131 ,
GSM406132 ,
GSM406133 ,
GSM406134 ,
GSM406135 ,
GSM406136 ,
GSM406137 ,
GSM406138 ,
GSM406139 ,
GSM406140 ,
GSM406141 ,
GSM406142 ,
GSM406143 ,
GSM406144 ,
GSM406145 ,
GSM406146 ,
GSM406147 ,
GSM406148 ,
GSM406149 ,
GSM406150 ,
GSM406151 ,
GSM406152 ,
GSM406153 ,
GSM406154 ,
GSM406155 ,
GSM406156 ,
GSM406157 ,
GSM406158 ,
GSM406159 ,
GSM406160 ,
GSM406161 ,
GSM406162 ,
GSM406163 ,
GSM406164 ,
GSM406165 ,
GSM406166 ,
GSM406167 ,
GSM406168 ,
GSM406169 ,
GSM406170 ,
GSM406171 ,
GSM406172 ,
GSM406173 ,
GSM406174 ,
GSM406175 ,
GSM406176 ,
GSM406177 ,
GSM406178 ,
GSM406179 ,
GSM406180 Series (5)
GSE6267 A global gene expression analysis in the shoot apical meristem of maize (Zea mays L.)
GSE7248 Transcriptome analyses of narrow sheath shoot apical meristem (SAM) vs non-mutant SAM
GSE9610 A global analysis of gene expression in histological layers of the shoot apical meristem of maize
GSE11325 Transcriptome analyses of ragged seedling2 shoot apical meristem (SAM) vs non-mutant SAM
GSE16136 Regulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids
Data table header descriptions ID field Name of a field where the spot is located. In this chip there were two fields named A and B, they described the upper and lower part(location) of the chip
meta_row The number of rows of subgrids
meta_column The number of columns of subgrids
row The number of rows of spots contained within the grid
column The number of columns of spots contained within the grid
ref Plate source refer information of spots
GB_ACC GeneBank Accession Number of spots
GB_LIST List of GenBank Accession Numbers if a spot is associated with more than one number
SPOT_ID Identify the feature of spots without GB_ACC
SPOT_INFO Specifies spot category - Maize Gene, Maize Control Gene, Exogenous (Human Control Gene), Unspecified (Suspected cross contamination), Empty (The original source plate well was empty or added to chip to fill the matrix), BadPCR (Anything that didn't have one distinct band, e.g. no band, multiple bands, smears) and 50% DMSO (Printing Buffer, No DNA)
Data table ID field meta_row meta_column row column ref GB_ACC GB_LIST SPOT_ID SPOT_INFO 1
A
1
1
1
1
mappedg0508_V2-I-13-BM336095
BM336095 Maize Gene
2
A
1
1
1
2
mappedg0508_V2-A-13-BM332947
BM332947 Maize Gene
3
A
1
1
1
3
mappedg0508_V2-I-9-BM332814
BM332814 Maize Gene
4
A
1
1
1
4
mappedg0508_V2-A-9-BM332662
BM332662 Maize Gene
5
A
1
1
1
5
mappedg0508_V2-I-5-BM332499
BM332499 Maize Gene
6
A
1
1
1
6
mappedg0508_V2-A-5-BM332447
BM332447 Maize Gene
7
A
1
1
1
7
mappedg0508_V2-I-1-BM335711
BM335711 Maize Gene
8
A
1
1
1
8
mappedg0508_V2-A-1-BM335672
BM335672 Maize Gene
9
A
1
1
1
9
mappedg0104_V2-I-21-BM080661
BM080661 Maize Gene
10
A
1
1
1
10
mappedg0104_V2-A-21-BM080645
BM080645 Maize Gene
11
A
1
1
1
11
mappedg0104_V2-I-17-BG840684*BG840487
BG840684 , BG840487 Maize Gene
12
A
1
1
1
12
mappedg0104_V2-A-17-BG840178*BG840508
BG840178 , BG840508 Maize Gene
13
A
1
1
1
13
mappedg0104_V2-I-13-BM080453
BM080453 Maize Gene
14
A
1
1
1
14
mappedg0104_V2-A-13-BM080420
BM080420 Maize Gene
15
A
1
1
1
15
mappedg0104_V2-I-9-BM080288
BM080288 Maize Gene
16
A
1
1
1
16
mappedg0104_V2-A-9-BM080255
BM080255 Maize Gene
17
A
1
1
1
17
mappedg0104_V2-I-5-BM080160
BM080160 Maize Gene
18
A
1
1
1
18
mappedg0104_V2-A-5-BM080051
BM080051 Maize Gene
19
A
1
1
1
19
mappedg0104_V2-I-1-BM079864
BM079864 Maize Gene
20
A
1
1
1
20
mappedg0104_V2-A-1-BM079811
BM079811 Maize Gene
16000 1012 Kbytes .Supplementary data files not provided
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