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Platform GPL23040 Query DataSets for GPL23040
Status Public on Feb 07, 2017
Title [Clariom_S_Rat] Affymetrix Clariom S Assay, Rat (Includes Pico Assay)
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol See manufacturers website
 
Description This platform supports submissions for:
Clariom S Assay:
https://www.thermofisher.com/order/catalog/product/902935
Clariom S Pico Assay:
https://www.thermofisher.com/order/catalog/product/902937

Annotations:
#%lib_set_version=r1
#%genome-species=Rattus norvegicus
#%genome-version=rn6
#%genome-version-ucsc=rn6
#%genome-version-ncbi=Rnor_6.0
#%genome-version-create_date=2014-07-30
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn6
#%genome-lifted_from-version-ncbi=Rnor_6.0
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36

 
Submission date Feb 07, 2017
Last update date Feb 01, 2019
Organization Affymetrix, Inc.
E-mail(s) [email protected], [email protected]
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (762) GSM2479538, GSM2479539, GSM2479540, GSM2479541, GSM2479542, GSM2479543 
Series (46)
GSE94623 Whole-transcriptome expression data from neonatal rat ventricular myocytes (NRVM) silenced for KChIP2
GSE112510 Nitrated meat products are associated with mania in humans and altered behavior and brain gene expression in rats
GSE119524 Expression data from Tsc2-null cell line ELT3, and the ELT3-derivative rapamycin-resistant cell line ELT3-245

Data table header descriptions
ID transcript_cluster_id
probeset_id
seqname
strand
start
stop
total_probes
mrna_assignment
category
SPOT_ID locus type & mrna_assignment
SPOT_ID

Data table
ID probeset_id seqname strand start stop total_probes mrna_assignment category SPOT_ID SPOT_ID
TC0100000006.rn.2 TC0100000006.rn.2 chr1 + 699413 708065 10 ENSRNOT00000072360 // ENSEMBL // vomeronasal type-2 receptor 26-like [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD6502594_1 // Rat Genome Database // ENCODES a protein that exhibits G-protein coupled receptor activity (inferred) AND INVOLVED IN G-protein coupled receptor signaling pathway (inferred) AND FOUND IN integral component of membrane (inferred) AND plasma membrane (inferred) // chr1 // 100 // 100 // 0 // --- // 0 /// Vom2r5.aSep08 // Ace View // vomeronasal 2 receptor, 5 // chr1 // 100 // 100 // 0 // --- // 0 main Multiple_Complex ENSRNOT00000072360 // ENSEMBL // vomeronasal type-2 receptor 26-like [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD6502594_1 // Rat Genome Database // ENCODES a protein that exhibits G-protein coupled receptor activity (inferred) AND INVOLVED IN G-protein coupled receptor signaling pathway (inferred) AND FOUND IN integral component of membrane (inferred) AND plasma membrane (inferred) // chr1 // 100 // 100 // 0 // --- // 0 /// Vom2r5.aSep08 // Ace View // vomeronasal 2 receptor, 5 // chr1 // 100 // 100 // 0 // --- // 0
TC0100000010.rn.2 TC0100000010.rn.2 chr1 + 1181301 1200532 10 ENSRNOT00000029038 // ENSEMBL // Uncharacterized protein // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7725182_1 // Rat Genome Database // ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog) AND INVOLVED IN cellular response to exogenous dsRNA (ortholog) AND cellular response to lipopolysaccharide (ortholog) AND defense response to bacterium (ortholog) AND FOUND IN external side of plasma membrane (ortholog) AND INTERACTS WITH (S)-nicotine (ortholog) AND 4-hydroxynon-2-enal (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 main Coding ENSRNOT00000029038 // ENSEMBL // Uncharacterized protein // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7725182_1 // Rat Genome Database // ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog) AND INVOLVED IN cellular response to exogenous dsRNA (ortholog) AND cellular response to lipopolysaccharide (ortholog) AND defense response to bacterium (ortholog) AND FOUND IN external side of plasma membrane (ortholog) AND INTERACTS WITH (S)-nicotine (ortholog) AND 4-hydroxynon-2-enal (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0
TC0100000011.rn.2 TC0100000011.rn.2 chr1 + 1202412 1203952 10 mRNARGD7509853_1 // Rat Genome Database // retinoic acid early-inducible protein 1-gamma-like // chr1 // 100 // 100 // 0 // --- // 0 main Coding mRNARGD7509853_1 // Rat Genome Database // retinoic acid early-inducible protein 1-gamma-like // chr1 // 100 // 100 // 0 // --- // 0
TC0100000015.rn.2 TC0100000015.rn.2 chr1 + 1617385 1619634 10 ENSRNOT00000062030 // ENSEMBL // similar to Retinoic acid early inducible protein 1 delta precursor (RAE-1delta) [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 main Coding ENSRNOT00000062030 // ENSEMBL // similar to Retinoic acid early inducible protein 1 delta precursor (RAE-1delta) [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0
TC0100000019.rn.2 TC0100000019.rn.2 chr1 + 1671262 1731215 10 NM_001106217 // RefSeq // Rattus norvegicus low density lipoprotein receptor-related protein 11 (Lrp11), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019181 // ENSEMBL // low density lipoprotein receptor-related protein 11 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.aSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.cSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.dSep08-unspliced // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4123404_1 // Rat Genome Database // INTERACTS WITH all-trans-retinoic acid AND cisplatin AND (-)-epigallocatechin 3-gallate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000004 // Chalmel // Chalmel, et. al. AceView Annotation Lrp11.cSep08 // chr1 // 100 // 100 // 0 // --- // 0 /// bloflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001106217 // RefSeq // Rattus norvegicus low density lipoprotein receptor-related protein 11 (Lrp11), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019181 // ENSEMBL // low density lipoprotein receptor-related protein 11 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.aSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.cSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.dSep08-unspliced // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4123404_1 // Rat Genome Database // INTERACTS WITH all-trans-retinoic acid AND cisplatin AND (-)-epigallocatechin 3-gallate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000004 // Chalmel // Chalmel, et. al. AceView Annotation Lrp11.cSep08 // chr1 // 100 // 100 // 0 // --- // 0 /// bloflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0
TC0100000020.rn.2 TC0100000020.rn.2 chr1 + 1771704 1781554 10 NM_001128191 // RefSeq // Rattus norvegicus nucleoporin 43 (Nup43), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000073528 // ENSEMBL // nucleoporin 43 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC158756 // GenBank // Rattus norvegicus similar to Nucleoporin Nup43, mRNA (cDNA clone MGC:187947 IMAGE:9103164), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4126661_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7515978_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001128191 // RefSeq // Rattus norvegicus nucleoporin 43 (Nup43), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000073528 // ENSEMBL // nucleoporin 43 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC158756 // GenBank // Rattus norvegicus similar to Nucleoporin Nup43, mRNA (cDNA clone MGC:187947 IMAGE:9103164), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4126661_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7515978_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0
TC0100000021.rn.2 TC0100000021.rn.2 chr1 + 1784078 1817317 10 NM_001134543 // RefSeq // Rattus norvegicus large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020098 // ENSEMBL // large tumor suppressor kinase 1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137748_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641352_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641353_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// RGD1564085.aSep08 // Ace View // large tumor suppressor kinase 1 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000007 // Chalmel // large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// bleeflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001134543 // RefSeq // Rattus norvegicus large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020098 // ENSEMBL // large tumor suppressor kinase 1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137748_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641352_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641353_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// RGD1564085.aSep08 // Ace View // large tumor suppressor kinase 1 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000007 // Chalmel // large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// bleeflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0
TC0100000022.rn.2 TC0100000022.rn.2 chr1 + 1826151 1867786 10 NM_001004217 // RefSeq // Rattus norvegicus katanin p60 (ATPase-containing) subunit A1 (Katna1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020417 // ENSEMBL // katanin p60 (ATPase-containing) subunit A1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC097929 // GenBank // Rattus norvegicus katanin p60 (ATPase-containing) subunit A1, mRNA (cDNA clone MGC:116039 IMAGE:7444887), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Katna1.aSep08 // Ace View // katanin p60 (ATPase-containing) subunit A1 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2513818_1 // Rat Genome Database // ENCODES a protein that exhibits ATPase activity (ortholog) AND dynein binding (ortholog) AND microtubule binding (ortholog) AND INVOLVED IN microtubule severing AND negative regulation of neuron projection development AND ATP catabolic process (ortholog) AND FOUND IN axon AND growth cone AND neuronal cell body AND INTERACTS WITH 2 4-dinitrotoluene AND 2 6-dinitrotoluene AND (-)-epigallocatechin 3-gallate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000011 // Chalmel // katanin p60 (ATPase-containing) subunit A1 (Katna1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001004217 // RefSeq // Rattus norvegicus katanin p60 (ATPase-containing) subunit A1 (Katna1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020417 // ENSEMBL // katanin p60 (ATPase-containing) subunit A1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC097929 // GenBank // Rattus norvegicus katanin p60 (ATPase-containing) subunit A1, mRNA (cDNA clone MGC:116039 IMAGE:7444887), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Katna1.aSep08 // Ace View // katanin p60 (ATPase-containing) subunit A1 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2513818_1 // Rat Genome Database // ENCODES a protein that exhibits ATPase activity (ortholog) AND dynein binding (ortholog) AND microtubule binding (ortholog) AND INVOLVED IN microtubule severing AND negative regulation of neuron projection development AND ATP catabolic process (ortholog) AND FOUND IN axon AND growth cone AND neuronal cell body AND INTERACTS WITH 2 4-dinitrotoluene AND 2 6-dinitrotoluene AND (-)-epigallocatechin 3-gallate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000011 // Chalmel // katanin p60 (ATPase-containing) subunit A1 (Katna1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0
TC0100000025.rn.2 TC0100000025.rn.2 chr1 + 1897314 1930311 10 NM_001108457 // RefSeq // Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 4 (Ppil4), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000021437 // ENSEMBL // peptidylprolyl isomerase (cyclophilin)-like 4 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4131666_1 // Rat Genome Database // ENCODES a protein that exhibits poly(A) RNA binding (ortholog) AND INVOLVED IN protein folding (inferred) AND protein peptidyl-prolyl isomerization (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND cadmium dichloride AND phenethyl isothiocyanate // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7518621_1 // Rat Genome Database // ENCODES a protein that exhibits poly(A) RNA binding (ortholog) AND INVOLVED IN protein folding (inferred) AND protein peptidyl-prolyl isomerization (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND cadmium dichloride AND phenethyl isothiocyanate // chr1 // 100 // 100 // 0 // --- // 0 /// Ppil4.aSep08 // Ace View // peptidylprolyl isomerase (cyclophilin)-like 4 // chr1 // 100 // 100 // 0 // --- // 0 /// Ppil4.bSep08 // Ace View // peptidylprolyl isomerase (cyclophilin)-like 4 // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001108457 // RefSeq // Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 4 (Ppil4), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000021437 // ENSEMBL // peptidylprolyl isomerase (cyclophilin)-like 4 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4131666_1 // Rat Genome Database // ENCODES a protein that exhibits poly(A) RNA binding (ortholog) AND INVOLVED IN protein folding (inferred) AND protein peptidyl-prolyl isomerization (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND cadmium dichloride AND phenethyl isothiocyanate // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7518621_1 // Rat Genome Database // ENCODES a protein that exhibits poly(A) RNA binding (ortholog) AND INVOLVED IN protein folding (inferred) AND protein peptidyl-prolyl isomerization (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND cadmium dichloride AND phenethyl isothiocyanate // chr1 // 100 // 100 // 0 // --- // 0 /// Ppil4.aSep08 // Ace View // peptidylprolyl isomerase (cyclophilin)-like 4 // chr1 // 100 // 100 // 0 // --- // 0 /// Ppil4.bSep08 // Ace View // peptidylprolyl isomerase (cyclophilin)-like 4 // chr1 // 100 // 100 // 0 // --- // 0
TC0100000027.rn.2 TC0100000027.rn.2 chr1 + 1938026 1972919 10 NM_001107469 // RefSeq // Rattus norvegicus zinc finger CCCH type containing 12D (Zc3h12d), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000065646 // ENSEMBL // zinc finger CCCH type containing 12D [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137742_1 // Rat Genome Database // ENCODES a protein that exhibits metal ion binding (inferred) AND INVOLVED IN negative regulation of cell growth (ortholog) AND negative regulation of G1/S transition of mitotic cell cycle (ortholog) AND FOUND IN cytoplasm (ortholog) AND nucleus (ortholog) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7586315_1 // Rat Genome Database // ENCODES a protein that exhibits metal ion binding (inferred) AND INVOLVED IN negative regulation of cell growth (ortholog) AND negative regulation of G1/S transition of mitotic cell cycle (ortholog) AND FOUND IN cytoplasm (ortholog) AND nucleus (ortholog) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Zc3h12d.aSep08 // Ace View // zinc finger CCCH type containing 12D // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001107469 // RefSeq // Rattus norvegicus zinc finger CCCH type containing 12D (Zc3h12d), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000065646 // ENSEMBL // zinc finger CCCH type containing 12D [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137742_1 // Rat Genome Database // ENCODES a protein that exhibits metal ion binding (inferred) AND INVOLVED IN negative regulation of cell growth (ortholog) AND negative regulation of G1/S transition of mitotic cell cycle (ortholog) AND FOUND IN cytoplasm (ortholog) AND nucleus (ortholog) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7586315_1 // Rat Genome Database // ENCODES a protein that exhibits metal ion binding (inferred) AND INVOLVED IN negative regulation of cell growth (ortholog) AND negative regulation of G1/S transition of mitotic cell cycle (ortholog) AND FOUND IN cytoplasm (ortholog) AND nucleus (ortholog) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Zc3h12d.aSep08 // Ace View // zinc finger CCCH type containing 12D // chr1 // 100 // 100 // 0 // --- // 0
TC0100000045.rn.2 TC0100000045.rn.2 chr1 + 4050810 4051124 10 mRNARGD7616760_1 // Rat Genome Database // similar to 60S ribosomal protein L7a // chr1 // 100 // 100 // 0 // --- // 0 main Coding mRNARGD7616760_1 // Rat Genome Database // similar to 60S ribosomal protein L7a // chr1 // 100 // 100 // 0 // --- // 0
TC0100000058.rn.2 TC0100000058.rn.2 chr1 + 5239766 5313064 10 NM_001107470 // RefSeq // Rattus norvegicus SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase (Shprh), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019893 // ENSEMBL // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137726_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7685560_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7685561_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Shprh.aSep08 // Ace View // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase // chr1 // 100 // 100 // 0 // --- // 0 /// Shprh.bSep08 // Ace View // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001107470 // RefSeq // Rattus norvegicus SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase (Shprh), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019893 // ENSEMBL // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137726_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7685560_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7685561_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog) AND INVOLVED IN protein polyubiquitination (ortholog) AND FOUND IN nucleosome (inferred) AND nucleus (inferred) AND INTERACTS WITH cadmium dichloride AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Shprh.aSep08 // Ace View // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase // chr1 // 100 // 100 // 0 // --- // 0 /// Shprh.bSep08 // Ace View // SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase // chr1 // 100 // 100 // 0 // --- // 0
TC0100000059.rn.2 TC0100000059.rn.2 chr1 + 5366127 5389995 10 NM_001007690 // RefSeq // Rattus norvegicus F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019918 // ENSEMBL // F-box protein 30 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC083823 // GenBank // Rattus norvegicus F-box protein 30, mRNA (cDNA clone MGC:94907 IMAGE:7111792), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Fbxo30.aSep08 // Ace View // F-box protein 30 // chr1 // 100 // 100 // 0 // --- // 0 /// Fbxo30.bSep08 // Ace View // F-box protein 30 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2758263_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred) AND zinc ion binding (inferred) AND INVOLVED IN protein ubiquitination (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND indole-3-methanol AND nickel dichloride // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7497320_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred) AND zinc ion binding (inferred) AND INVOLVED IN protein ubiquitination (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND indole-3-methanol AND nickel dichloride // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000028 // Chalmel // F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00008498 // Chalmel // F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001007690 // RefSeq // Rattus norvegicus F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019918 // ENSEMBL // F-box protein 30 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC083823 // GenBank // Rattus norvegicus F-box protein 30, mRNA (cDNA clone MGC:94907 IMAGE:7111792), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Fbxo30.aSep08 // Ace View // F-box protein 30 // chr1 // 100 // 100 // 0 // --- // 0 /// Fbxo30.bSep08 // Ace View // F-box protein 30 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2758263_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred) AND zinc ion binding (inferred) AND INVOLVED IN protein ubiquitination (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND indole-3-methanol AND nickel dichloride // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7497320_1 // Rat Genome Database // ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred) AND zinc ion binding (inferred) AND INVOLVED IN protein ubiquitination (inferred) AND INTERACTS WITH 2 4-dinitrotoluene AND indole-3-methanol AND nickel dichloride // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000028 // Chalmel // F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00008498 // Chalmel // F-box protein 30 (Fbxo30), mRNA. // chr1 // 100 // 100 // 0 // --- // 0
TC0100000061.rn.2 TC0100000061.rn.2 chr1 + 5448958 5572849 10 NM_001276762 // RefSeq // Rattus norvegicus epilepsy, progressive myoclonus type 2A (Epm2a), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000061930 // ENSEMBL // epilepsy, progressive myoclonus type 2A [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7607169_1 // Rat Genome Database // ENCODES a protein that exhibits carbohydrate phosphatase activity (ortholog) AND protein serine/threonine phosphatase activity (ortholog) AND protein tyrosine phosphatase activity (ortholog) AND INVOLVED IN habituation (ortholog) AND nervous system development (ortholog) AND peptidyl-tyrosine dephosphorylation (ortholog) AND ASSOCIATED WITH Lafora Disease (ortholog) AND Myoclonic Epilepsies Progressive (ortholog) AND FOUND IN cytoplasm (ortholog) AND cytosol (ortholog) AND nucleus (ortholog) AND INTERACTS WITH ammonium chloride AND benzo[a]pyrene (ortholog) AND copper(2+) sulfate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001276762 // RefSeq // Rattus norvegicus epilepsy, progressive myoclonus type 2A (Epm2a), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000061930 // ENSEMBL // epilepsy, progressive myoclonus type 2A [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7607169_1 // Rat Genome Database // ENCODES a protein that exhibits carbohydrate phosphatase activity (ortholog) AND protein serine/threonine phosphatase activity (ortholog) AND protein tyrosine phosphatase activity (ortholog) AND INVOLVED IN habituation (ortholog) AND nervous system development (ortholog) AND peptidyl-tyrosine dephosphorylation (ortholog) AND ASSOCIATED WITH Lafora Disease (ortholog) AND Myoclonic Epilepsies Progressive (ortholog) AND FOUND IN cytoplasm (ortholog) AND cytosol (ortholog) AND nucleus (ortholog) AND INTERACTS WITH ammonium chloride AND benzo[a]pyrene (ortholog) AND copper(2+) sulfate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0
TC0100000078.rn.2 TC0100000078.rn.2 chr1 + 7101715 7102427 10 NM_001126092 // RefSeq // Rattus norvegicus splicing factor 3b, subunit 5 (Sf3b5), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019994 // ENSEMBL // splicing factor 3b, subunit 5 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4123542_1 // Rat Genome Database // PARTICIPATES IN spliceosome pathway AND FOUND IN nucleus (ortholog) AND U12-type spliceosomal complex (ortholog) AND INTERACTS WITH dibutyl phthalate AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Sf3b5.aSep08-unspliced // Ace View // splicing factor 3b, subunit 5 // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001126092 // RefSeq // Rattus norvegicus splicing factor 3b, subunit 5 (Sf3b5), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019994 // ENSEMBL // splicing factor 3b, subunit 5 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4123542_1 // Rat Genome Database // PARTICIPATES IN spliceosome pathway AND FOUND IN nucleus (ortholog) AND U12-type spliceosomal complex (ortholog) AND INTERACTS WITH dibutyl phthalate AND 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// Sf3b5.aSep08-unspliced // Ace View // splicing factor 3b, subunit 5 // chr1 // 100 // 100 // 0 // --- // 0
TC0100000081.rn.2 TC0100000081.rn.2 chr1 + 7219545 7270169 10 NM_012760 // RefSeq // Rattus norvegicus pleiomorphic adenoma gene-like 1 (Plagl1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000030329 // ENSEMBL // pleiomorphic adenoma gene-like 1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2711029_1 // Rat Genome Database // ENCODES a protein that exhibits DNA binding (ortholog) AND RNA polymerase II regulatory region sequence-specific DNA binding (ortholog) AND RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (ortholog) AND INVOLVED IN positive regulation of transcription from RNA polymerase II promoter (ortholog) AND regulation of gene expression (ortholog) AND skeletal muscle cell differentiation (ortholog) AND ASSOCIATED WITH Diabetes Mellitus Transient Neonatal 1 (ortholog) AND FOUND IN cytoplasm (ortholog) AND Golgi apparatus (ortholog) AND nucleus (ortholog) AND INTERACTS WITH (S)-colchicine AND 6-propyl-2-thiouracil AND ammonium chloride // chr1 // 100 // 100 // 0 // --- // 0 /// Plagl1.aSep08 // Ace View // pleiomorphic adenoma gene-like 1 // chr1 // 100 // 100 // 0 // --- // 0 /// farflar.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 /// zf-C2H2.90.aSep08 // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_012760 // RefSeq // Rattus norvegicus pleiomorphic adenoma gene-like 1 (Plagl1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000030329 // ENSEMBL // pleiomorphic adenoma gene-like 1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2711029_1 // Rat Genome Database // ENCODES a protein that exhibits DNA binding (ortholog) AND RNA polymerase II regulatory region sequence-specific DNA binding (ortholog) AND RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (ortholog) AND INVOLVED IN positive regulation of transcription from RNA polymerase II promoter (ortholog) AND regulation of gene expression (ortholog) AND skeletal muscle cell differentiation (ortholog) AND ASSOCIATED WITH Diabetes Mellitus Transient Neonatal 1 (ortholog) AND FOUND IN cytoplasm (ortholog) AND Golgi apparatus (ortholog) AND nucleus (ortholog) AND INTERACTS WITH (S)-colchicine AND 6-propyl-2-thiouracil AND ammonium chloride // chr1 // 100 // 100 // 0 // --- // 0 /// Plagl1.aSep08 // Ace View // pleiomorphic adenoma gene-like 1 // chr1 // 100 // 100 // 0 // --- // 0 /// farflar.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 /// zf-C2H2.90.aSep08 // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0
TC0100000086.rn.2 TC0100000086.rn.2 chr1 + 7658883 7673673 10 NM_001004218 // RefSeq // Rattus norvegicus fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020946 // ENSEMBL // fucosidase, alpha-L- 2, plasma [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC078933 // GenBank // Rattus norvegicus fucosidase, alpha-L- 2, plasma, mRNA (cDNA clone MGC:93735 IMAGE:7107565), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.aSep08 // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.bSep08-unspliced // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.cSep08 // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2513706_1 // Rat Genome Database // ENCODES a protein that exhibits alpha-L-fucosidase activity (ortholog) AND INVOLVED IN fucose metabolic process (ortholog) AND glycoside catabolic process (ortholog) AND regulation of entry of bacterium into host cell (ortholog) AND FOUND IN extracellular space (ortholog) AND extracellular vesicular exosome (ortholog) AND INTERACTS WITH 17alpha-ethynylestradiol AND 2 6-dinitrotoluene AND fipronil // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000039 // Chalmel // fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00008503 // Chalmel // fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001004218 // RefSeq // Rattus norvegicus fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020946 // ENSEMBL // fucosidase, alpha-L- 2, plasma [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC078933 // GenBank // Rattus norvegicus fucosidase, alpha-L- 2, plasma, mRNA (cDNA clone MGC:93735 IMAGE:7107565), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.aSep08 // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.bSep08-unspliced // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// Fuca2.cSep08 // Ace View // fucosidase, alpha-L- 2, plasma // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2513706_1 // Rat Genome Database // ENCODES a protein that exhibits alpha-L-fucosidase activity (ortholog) AND INVOLVED IN fucose metabolic process (ortholog) AND glycoside catabolic process (ortholog) AND regulation of entry of bacterium into host cell (ortholog) AND FOUND IN extracellular space (ortholog) AND extracellular vesicular exosome (ortholog) AND INTERACTS WITH 17alpha-ethynylestradiol AND 2 6-dinitrotoluene AND fipronil // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000039 // Chalmel // fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00008503 // Chalmel // fucosidase, alpha-L- 2, plasma (Fuca2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0
TC0100000088.rn.2 TC0100000088.rn.2 chr1 + 7726447 7743112 10 NM_001115028 // RefSeq // Rattus norvegicus adenosine deaminase, tRNA-specific 2 (Adat2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// BC158616 // GenBank // Rattus norvegicus deaminase domain containing 1, mRNA (cDNA clone MGC:187499 IMAGE:7388507), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000073460 // ENSEMBL // adenosine deaminase, tRNA-specific 2 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4131626_1 // Rat Genome Database // INTERACTS WITH cocaine AND indole-3-methanol AND 17alpha-ethynylestradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_001115028 // RefSeq // Rattus norvegicus adenosine deaminase, tRNA-specific 2 (Adat2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// BC158616 // GenBank // Rattus norvegicus deaminase domain containing 1, mRNA (cDNA clone MGC:187499 IMAGE:7388507), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000073460 // ENSEMBL // adenosine deaminase, tRNA-specific 2 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4131626_1 // Rat Genome Database // INTERACTS WITH cocaine AND indole-3-methanol AND 17alpha-ethynylestradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0
TC0100000091.rn.2 TC0100000091.rn.2 chr1 + 8124914 8156649 10 mRNARGD7516556_1 // Rat Genome Database // uncharacterized LOC102551337 // chr1 // 100 // 100 // 0 // --- // 0 main Coding mRNARGD7516556_1 // Rat Genome Database // uncharacterized LOC102551337 // chr1 // 100 // 100 // 0 // --- // 0
TC0100000093.rn.2 TC0100000093.rn.2 chr1 + 8129354 8333890 10 NM_024137 // RefSeq // Rattus norvegicus human immunodeficiency virus type I enhancer binding protein 2 (Hivep2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000015131 // ENSEMBL // human immunodeficiency virus type I enhancer binding protein 2 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.aSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.bSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.cSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2539308_1 // Rat Genome Database // ENCODES a protein that exhibits DNA binding (inferred) AND metal ion binding (inferred) AND nucleic acid binding (inferred) AND INVOLVED IN regulation of transcription DNA-templated (inferred) AND transcription DNA-templated (inferred) AND FOUND IN nucleus (ortholog) AND INTERACTS WITH 1 1 1-trichloro-2 2-bis(4-hydroxyphenyl)ethane AND 3' 5'-cyclic AMP AND 3 3' 4 4' 5-pentachlorobiphenyl // chr1 // 100 // 100 // 0 // --- // 0 main Coding NM_024137 // RefSeq // Rattus norvegicus human immunodeficiency virus type I enhancer binding protein 2 (Hivep2), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000015131 // ENSEMBL // human immunodeficiency virus type I enhancer binding protein 2 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.aSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.bSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// Hivep2.cSep08 // Ace View // human immunodeficiency virus type I enhancer binding protein 2 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD2539308_1 // Rat Genome Database // ENCODES a protein that exhibits DNA binding (inferred) AND metal ion binding (inferred) AND nucleic acid binding (inferred) AND INVOLVED IN regulation of transcription DNA-templated (inferred) AND transcription DNA-templated (inferred) AND FOUND IN nucleus (ortholog) AND INTERACTS WITH 1 1 1-trichloro-2 2-bis(4-hydroxyphenyl)ethane AND 3' 5'-cyclic AMP AND 3 3' 4 4' 5-pentachlorobiphenyl // chr1 // 100 // 100 // 0 // --- // 0

Total number of rows: 24871

Table truncated, full table size 72339 Kbytes.




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