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Platform GPL22253 Query DataSets for GPL22253
Status Public on Mar 08, 2017
Title Agilent-079141 PPCD1-3_loci G4126A 8X60 array (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-079141 PPCD1-3_loci G4126A
 
Submission date Jul 28, 2016
Last update date Mar 08, 2017
Contact name Anthony J. Aldave
E-mail(s) [email protected]
Organization name Stein Eye Institute, UCLA
Department Ophthalmology
Lab Cornea Genetics Laboratory
Street address 200 Stein Plaza DSERC 3-143
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Samples (8) GSM2254429, GSM2254430, GSM2254431, GSM2254432, GSM2254433, GSM2254434 
Series (1)
GSE84940 Confirmation of the OVOL2 Promoter Mutation c.-307T>C in Posterior Polymorphous Corneal Dystrophy 1
Relations
Alternative to GPL22252

Data table header descriptions
ID Agilent probe name
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ENSEMBL
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB RefSeq accession.version of chromosome (hg19/GRCh37)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
DESCRIPTION Description
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GB_ACC ENSEMBL GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END DESCRIPTION SPOT_ID
HsCGHBrightCorner pos CONTROL
DarkCorner pos CONTROL
A_16_P21101575 FALSE chr20:22726759-22726818 chr20 NC_000020.10 22726759 22726818
A_16_P56397462 FALSE chr10:29573912-29573960 chr10 NC_000010.10 29573912 29573960
A_18_P22386521 FALSE chr20:33130312-33130371 chr20 NC_000020.10 33130312 33130371
A_16_P39698926 FALSE NM_001278469 entg|MON2 entg|MON2 homolog (S. cerevisiae) ref|NM_001278469|ref|NM_001278470|ref|NM_001278471|ref|NM_001278472|ref|NM_015026 chr12:62918857-62918916 chr12 NC_000012.11 62918857 62918916 entg|MON2 homolog (S. cerevisiae)
A_16_P18880660 FALSE NM_020848 entg|KIAA1462 entg|KIAA1462 ref|NM_020848 chr10:30308864-30308923 chr10 NC_000010.10 30308864 30308923 entg|KIAA1462
A_16_P03501982 FALSE chr20:23342100-23342144 chr20 NC_000020.10 23342100 23342144
A_16_P58196603 FALSE NM_024893 entg|SYNDIG1 entg|synapse differentiation inducing 1 ref|NM_024893 chr20:24505771-24505830 chr20 NC_000020.10 24505771 24505830 entg|synapse differentiation inducing 1
A_16_P58194243 FALSE NM_001283018 entg|NAPB entg|N-ethylmaleimide-sensitive factor attachment protein, beta ref|NM_001283018|ref|NM_001283020|ref|NM_001283026|ref|NM_022080|ref|NR_104266 chr20:23370026-23370085 chr20 NC_000020.10 23370026 23370085 entg|N-ethylmaleimide-sensitive factor attachment protein, beta
A_18_P13778840 FALSE chr20:30860814-30860873 chr20 NC_000020.10 30860814 30860873
A_16_P56403157 FALSE chr10:33186331-33186390 chr10 NC_000010.10 33186331 33186390
A_16_P56396864 FALSE chr10:29133673-29133730 chr10 NC_000010.10 29133673 29133730
A_16_P02245261 FALSE chr10:33834893-33834952 chr10 NC_000010.10 33834893 33834952
A_16_P03507603 FALSE chr20:31743866-31743925 chr20 NC_000020.10 31743866 31743925
A_16_P18888070 FALSE chr10:33715608-33715667 chr10 NC_000010.10 33715608 33715667
A_16_P56399552 FALSE NM_001143769 entg|ZNF438 entg|zinc finger protein 438 ref|NM_001143769|ref|NM_001143766|ref|NM_001143767|ref|NM_001143768|ref|NM_001143770|ref|NM_001143771|ref|NM_182755|ref|NR_026560 chr10:31205792-31205851 chr10 NC_000010.10 31205792 31205851 entg|zinc finger protein 438
A_16_P58188920 FALSE NM_015585 entg|CFAP61 entg|cilia and flagella associated protein 61 ref|NM_015585|ref|NM_001167816 chr20:20089488-20089547 chr20 NC_000020.10 20089488 20089547 entg|cilia and flagella associated protein 61
A_16_P58188729 FALSE NM_001242581 entg|RIN2 entg|Ras and Rab interactor 2 ref|NM_001242581|ref|NM_018993 chr20:19962004-19962056 chr20 NC_000020.10 19962004 19962056 entg|Ras and Rab interactor 2
A_16_P18887465 FALSE NM_001244972 entg|NRP1 ref|NM_001244972|ref|NM_001244973|ref|NM_003873|ref|NR_045259|ref|NM_001024628|ref|NM_001024629 chr10:33516866-33516925 chr10 NC_000010.10 33516866 33516925

Total number of rows: 57802

Table truncated, full table size 8578 Kbytes.




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