NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL21096 Query DataSets for GPL21096
Status Public on Aug 23, 2016
Title Agilent-062918 Human lncRNA array V4.0 (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description 78,243 human lncRNAs and 30,215 coding transcripts.
 
Submission date Nov 02, 2015
Last update date Aug 23, 2016
Contact name Ying Wu
E-mail(s) [email protected]
Phone 13665186889
Organization name Nanjing Medical University Affiliated Cancer Hospital Cancer Institute of Jiangsu Province
Street address Baiziting 42
City Nanjing
ZIP/Postal code 210009
Country China
 
Samples (27) GSM1923228, GSM1923229, GSM1923230, GSM1923231, GSM1923232, GSM1923233 
Series (4)
GSE74575 Microarray expression profile of long noncoding RNAs in EGFR-TKI resistance of lung adenocarcinoma
GSE92603 HFF Cells: Control vs. Toxoplasma gondii infected
GSE106724 Profiles for long noncoding RNAs in ovarian granulosa cells from polycystic ovary syndrome patients with different serum concentrations of androgen

Data table header descriptions
ID Agilent probe name
TargetID
ncRNA_SeqID
Source
ncRNA_Accession
Description
Genome
ORF ORF Name
Seq_type
Chr
start
end
strand
ControlType
EntrezGeneID
GB_ACC GenBank Accession number
GeneName
Go
RefSeqAccession
UniGeneID
SEQUENCE
SourceID
SourceLink
GenomeBuild
Xref
BioType
SPOT_ID

Data table
ID TargetID ncRNA_SeqID Source ncRNA_Accession Description Genome ORF Seq_type Chr start end strand ControlType EntrezGeneID GB_ACC GeneName Go RefSeqAccession UniGeneID SEQUENCE SourceID SourceLink GenomeBuild Xref BioType SPOT_ID
A_33_P3424577 Agilent_humanG3V2 Homo sapiens T cell receptor beta chain mRNA, complete cds. [EF101778] hg19 mRNA + FALSE A23747 Hs.382212
A_33_P3213617 Agilent_humanG3V2 T cell receptor beta variable 5-6 [Source:HGNC Symbol;Acc:12223] [ENST00000390375] hg19 mRNA chr7 - FALSE A25493 Hs.716215
A_33_P3314850 Agilent_humanG3V2 T cell receptor beta variable 6-4 [Source:HGNC Symbol;Acc:12229] [ENST00000390360] hg19 mRNA chr7 - FALSE A25966 Hs.722423
A_33_P3424636 Agilent_humanG3V2 T cell receptor beta variable 4-2 [Source:HGNC Symbol;Acc:12216] [ENST00000390392] hg19 mRNA chr7 + FALSE A25968 Hs.511728
A_33_P3299329 Agilent_humanG3V2 Human mRNA for T-cell receptor V beta gene segment V-beta-7, clone IGRb18. [X58812] hg19 mRNA + FALSE A25969 Hs.511728
A_33_P3256031 Agilent_humanG3V2 T cell receptor beta variable 4-1 [Source:HGNC Symbol;Acc:12215] [ENST00000390357] hg19 mRNA chr7 + FALSE A25970 Hs.534422
A_33_P3377729 Agilent_humanG3V2 zr93d04.r1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:683239 5' similar to contains THR.b3 THR repetitive element ;, mRNA sequence [AA213559] hg19 mRNA chr12 + FALSE AA213559 Hs.661244
A_33_P3275226 Agilent_humanG3V2 zt60a09.r1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:726712 5', mRNA sequence [AA401793] hg19 mRNA chr2 + FALSE AA401793 Hs.720873
A_33_P3806295 Agilent_humanG3V2 zt97f01.r1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:730297 5', mRNA sequence [AA412132] hg19 mRNA chr21 - FALSE AA412132 Hs.580899
A_33_P3249982 Agilent_humanG3V2 zt99e08.r1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:730502 5', mRNA sequence [AA412392] hg19 mRNA chr16 - FALSE AA412392 Hs.599530
A_33_P3215605 Agilent_humanG3V2 zw68g07.r1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:781404 5', mRNA sequence [AA430309] hg19 mRNA chr9 + FALSE AA430309 Hs.693955
A_33_P3311668 Agilent_humanG3V2 aa43c10.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:823698 5', mRNA sequence [AA489744] hg19 mRNA chr12 + FALSE AA489744 Hs.577721
A_33_P3272010 Agilent_humanG3V2 zv51g10.r1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:757218 5', mRNA sequence [AA496144] hg19 mRNA chr19 - FALSE AA496144 Hs.652587
A_33_P3696965 Agilent_humanG3V2 nl83g08.s1 NCI_CGAP_Br2 Homo sapiens cDNA clone IMAGE:1057310 3' similar to contains L1.t2 L1 repetitive element ;, mRNA sequence [AA593742] hg19 mRNA chr2 + FALSE AA593742 Hs.720995
A_32_P194962 Agilent_humanG3V2 nq71a04.s1 NCI_CGAP_Pr22 Homo sapiens cDNA clone IMAGE:1157742 3' similar to SW:R13A_HUMAN P40429 60S RIBOSOMAL PROTEIN L13A ;, mRNA sequence [AA627135] hg19 mRNA chr19 - FALSE AA627135 Hs.728396
A_24_P8165 SLC15A1 Agilent_humanG3V2 solute carrier family 15 (oligopeptide transporter), member 1 [Source:HGNC Symbol;Acc:10920] [ENST00000376494] hg19 SLC15A1 mRNA chr13 - FALSE 6564 AB001328 solute carrier family 15 (oligopeptide transporter), member 1 GO:0005215|GO:0005886|GO:0007586|GO:0005624|GO:0005575|GO:0015031|GO:0055085|GO:0003674|GO:0015833|GO:0016020|GO:0006857|GO:0005887|GO:0006810|GO:0016021|GO:0015333|GO:0006811|GO:0015198|GO:0015293 Hs.436893
A_23_P355980 P2RX6 Agilent_humanG3V2 purinergic receptor P2X, ligand-gated ion channel, 6 [Source:HGNC Symbol;Acc:8538] [ENST00000413302] hg19 P2RX6 mRNA chr22 + FALSE 9127 AB002058 purinergic receptor P2X, ligand-gated ion channel, 6 GO:0030054|GO:0051291|GO:0042802|GO:0005737|GO:0006936|GO:0043197|GO:0006810|GO:0043025|GO:0001614|GO:0004872|GO:0051260|GO:0006812|GO:0006811|GO:0035590|GO:0004931|GO:0005624|GO:0014069|GO:0005524|GO:0007165|GO:0016020|GO:0005887|GO:0016021|GO:0005216|GO:0004888|GO:0015267 Hs.113275
A_33_P3306659 LOC728254 Agilent_humanG3V2 Homo sapiens mRNA, clone: sF2, from chromosome 5q21-q22. [AB002446] hg19 LOC728254 mRNA chr5 + FALSE 728254 AB002446 uncharacterized LOC728254 Hs.519514
A_23_P21120 MED14 Agilent_humanG3V2 mediator complex subunit 14 [Source:HGNC Symbol;Acc:2370] [ENST00000324817] hg19 MED14 mRNA chrX - FALSE 9282 AB006651 mediator complex subunit 14 GO:0003712|GO:0010467|GO:0001104|GO:0006367|GO:0006357|GO:0003713|GO:0005634|GO:0046966|GO:0030374|GO:0030518|GO:0042809|GO:0045944|GO:0016592|GO:0004872|GO:0005654|GO:0045893|GO:0030521 Hs.407604
A_33_P3320538 NUPL1 Agilent_humanG3V2 nucleoporin like 1 [Source:HGNC Symbol;Acc:20261] [ENST00000381745] hg19 NUPL1 mRNA chr13 + FALSE 9818 AB007870 nucleoporin like 1 GO:0031965|GO:0005975|GO:0005634|GO:0005635|GO:0015031|GO:0055085|GO:0010827|GO:0008645|GO:0005487|GO:0015758|GO:0016020|GO:0005643|GO:0016032|GO:0051028 Hs.594723

Total number of rows: 111087

Table truncated, full table size 35548 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL21096_062918_D_GEO_20131213.txt.gz 5.8 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap