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Platform GPL20994 Query DataSets for GPL20994
Status Public on Oct 16, 2015
Title Agilent-022825 S.aureus_020409_4x44K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Staphylococcus aureus subsp. aureus USA300_FPR3757
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description S.aureus_012909_base

Arrays of this design have barcodes that begin with 16022825 or 2522825.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 07, 2015
Last update date Oct 07, 2015
Contact name Mark McCreary
E-mail(s) [email protected]
Phone 6502254332
Organization name Genentech
Department Bioinformatics
Street address 1 DNA Way, MS 93
City South San Francisco
State/province California
ZIP/Postal code 94080
Country USA
 
Samples (16) GSM1904025, GSM1904026, GSM1904027, GSM1904028, GSM1904029, GSM1904030 
Series (1)
GSE73821 Global Gene Expression of Methicillin-resistant Staphylococcus aureus USA300 During Human and Mouse Infection

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
ACC GenBankAccession
ACCESSION_STRING Accession String
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ ACC ACCESSION_STRING SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 NA NA ignore
13 266 146 CUST_294_PI406932030 CUST_294_PI406932030 FALSE NC_007793.1_:c129693-128167 NC_007793.1_:c129693-128167 ref|NC_007793.1_:c129693-128167 TGGTAACGGAGTACATGTCGTTAAACCTGGTGATACAGTAAATGACATTGCAAAAGCAAA
14 266 144 CUST_7855_PI406932030 CUST_7855_PI406932030 FALSE gi|57651268_NucSeq_NC_002951_36... AGTTGTAAAAGTAGGTGTTGAGTACACTAAAAGCAAAAGTGCGCATGGTGGCTACTTAAT
15 266 142 CUST_4252_PI406932030 CUST_4252_PI406932030 FALSE NC_007793.1_:c2355244-2354438 NC_007793.1_:c2355244-2354438 ref|NC_007793.1_:c2355244-2354438 GTTATGATGCCAATGTTAAGAGAACGAGCTACAGACAGCTTAAATGGCAATTGAGAGATA
16 266 140 CUST_9654_PI406932030 CUST_9654_PI406932030 FALSE gi|49482478_NucSeq_NC_002952_27... CGTCCTTAGGGTTTTTGTATTGGATTACAATGGTCATGGCAATTTGATAATGATTGAGAT
17 266 138 CUST_8057_PI406932030 CUST_8057_PI406932030 FALSE gi|88195746_NucSeq_NC_007795_19... CTCTAGGTGTTAATGTAAGTGAACTATTTACTAGAAATCACAACACGCACAAATTAGAGG
18 266 136 CUST_2001_PI406932030 CUST_2001_PI406932030 FALSE NC_007793.1_:1080902-1082263 NC_007793.1_:1080902-1082263 ref|NC_007793.1_:1080902-1082263 CAACACAAGCAGGCGGAATAACCTTCGTTACAATTTTATTTGGCATATTGTACATCATTT
19 266 134 CUST_5919_PI406932030 CUST_5919_PI406932030 FALSE gi|88195754_NucSeq_NC_007795_19... TGACTCGTGGATAAAAGTTGATGAGAGGCTCAACAAAATGCTGAAAGGAGAAAACAATGG
20 266 132 CUST_4229_PI406932030 CUST_4229_PI406932030 FALSE NC_007793.1_:c2341429-2340575 NC_007793.1_:c2341429-2340575 ref|NC_007793.1_:c2341429-2340575 CGATTTATAAATAATCGAGAACTTATCAAAGGGGATGTGGTCTGCGGATTACAAGCTGAA

Total number of rows: 45220

Table truncated, full table size 7541 Kbytes.




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