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Platform GPL17469 Query DataSets for GPL17469
Status Public on Jul 30, 2013
Title Agilent-046637 Sus scrofa CGH array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sus scrofa
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16046637 or 2546637.

The ID column represents the Agilent Probe Name.

genome build: Sscrofa10.2
 
Submission date Jul 18, 2013
Last update date Jul 30, 2013
Contact name Huimin Kang
E-mail(s) [email protected]
Phone 18810882762
Organization name China Agriculture University
Street address Beijing
City Beijing
State/province Beijing
ZIP/Postal code 100193
Country China
 
Samples (12) GSM1197024, GSM1197025, GSM1197026, GSM1197027, GSM1197028, GSM1197029 
Series (1)
GSE49299 CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]

Data table header descriptions
ID Probe name
SEQUENCE
Chr
RANGE_GB Chromosome GenBank Accession number.version
RANGE_START
RANGE_END

Data table
ID SEQUENCE Chr RANGE_GB RANGE_START RANGE_END
s933448 AAGAAATAGGTATTTCTTAATGTGATGACTTGAGATGAAATGGAATAAGAAACTGATGGG chr7 NC_010449.4 86454721 86454780
s74363 ATGCAGTCCAAGACTCTGGATCATGTTACATATGGTAACAGCCTTTTACCTGGAGTCCCT chr1 NC_010443.4 167314501 167314560
s65557 TTGAAAGAATCTGCATTATTTGCTTTGGGTTCCTGCCTAAATTTCCCCAGCAACACCCTC chr1 NC_010443.4 147501181 147501240
s641352 CCTCCGCATTGTGACTGAGGCAGCTGCGTGATAGTGAACCCTGCATAACACCTGGTAGGT chr2 NC_010444.3 149339431 149339490
s212125 TAAAGAATATCATAAATATCATCCCCTGAGATAATTCTTAAGTTTATTCCATGCTGAGCA chr11 NC_010453.4 82854061 82854120
s654782 TTGTATTCTATTGATTACATCAACCATTAATTTTGTCAGTTGAATAAACTACTTGAGATT chr3 NC_010445.3 16986031 16986090
s462187 TTTTTAATTCCAGTCAAAATTTCATCAATCTTTGATCTGCAGTATTTATTAATAATGTAC chr15 NC_010457.4 121722751 121722810
s880436 TCTAGTCATCTGGGTACTCCTAGGTTATAACATATAATCAATAAACATTGTAAGTGAATG chr6 NC_010448.3 124944751 124944810
s896394 CGTGGAAATTGTCCACGATGCGTTTTGTGACCTGGTTTTGGGCAACTGATGATGAAGACA chr7 NC_010449.4 3082501 3082560
s535853 CTTGGGAGACTGACTACAGGTCTGACAAGTCTCAGAAAAATGGTGATGATATAACAAAAC chr17 NC_010459.4 42890581 42890640
s469209 TGGTAAGATCTATGCTCAGAGGCCTCACTTCAAGTTTTGTTCAGATCTTGGGTAAGATGT chr15 NC_010457.4 137523631 137523690
s509710 TCTGATGGCTGTTCATGGTGTCATTTGCTGCTTCACATCTGTTTAACTCGGAAGTGACAT chr16 NC_010458.3 70967251 70967310
s911921 GTAAAAGGAATCCAAAAGGCAGTGGATGGAGGGAGATGGTGGGGAAATGGCTGTCCGAGG chr7 NC_010449.4 38018251 38018310
s434105 CATGCTTAAGAGGAAAGTTTCTTAAGCCATTTTATTATGATTATCATGTTTTGGTTGGTT chr15 NC_010457.4 58538251 58538310
s495873 ATATAAACTTAGAGTGTCCAAAGGGGGAAAAATAGTTATGTCCCAATTTTTTTTTGTAAT chr16 NC_010458.3 39834001 39834060
s273335 GGCCATCCCACACACCATAGTTTCCATTTGTACTAAAACCTTTGTTGAAACAGATTGTTT chr13 NC_010455.4 69295561 69295620
s129786 AGACTTTTCTGTGCCTTGCAGGGTGTTTAGCCTGCCCAGCTCCAACCCTTGATGCCTCAT chr1 NC_010443.4 292016251 292016310
s10395 ACTGCGTGTCCTCTGGTATTTTCCCCTTTGCTAACTCTTAATAGAGAATGACAGAGACCA chr1 NC_010443.4 23386501 23386560
s16037 TTCTTTTTCACTTCTCAATCCTCTATGCTGGGTTTAACTAGTTCAAATACTTTAACCCCT chr1 NC_010443.4 36081241 36081300
s1115355 GTGTTTTGAAGGCCATTTATGGTACTACTGACAATTACAAATATTGATATTTATTTCAAG chrX NC_010461.4 58815361 58815420

Total number of rows: 965079

Table truncated, full table size 98861 Kbytes.




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Supplementary file Size Download File type/resource
GPL17469_046637_D_GEO_20130118.txt.gz 8.9 Mb (ftp)(http) TXT
GPL17469_susScr3_Agilent_CGH_probe-Seq.txt.gz 31.0 Mb (ftp)(http) TXT

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