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| Status |
Public on Jul 16, 2013 |
| Title |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1121501_At_TAIRG, Version 14.0.0] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
v14.0.0 Arabidopsis CustomCDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF
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| Submission date |
Sep 28, 2012 |
| Last update date |
Jul 18, 2013 |
| Contact name |
Simon Peter Pearce |
| E-mail(s) |
[email protected]
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| Organization name |
University of Nottingham
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| Department |
Plant and Crop Sciences
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| Street address |
Sutton Bonington Campus
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| City |
Sutton Bonington |
| State/province |
Leicestershire |
| ZIP/Postal code |
LE12 5RD |
| Country |
United Kingdom |
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| Samples (163)
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GSM1010602, GSM1010603, GSM1010604, GSM1010605, GSM1010606, GSM1010607
GSM1010608, GSM1010609, GSM1010610, GSM1010611, GSM1010612, GSM1010613, GSM1010614, GSM1010615, GSM1010616, GSM1010617, GSM1010618, GSM1010619, GSM1010620, GSM1010621, GSM1010622, GSM1010623, GSM1010624, GSM1010625, GSM1010626, GSM1010627, GSM1010628, GSM1010629, GSM1010630, GSM1010631, GSM1010632, GSM1010633, GSM1010634, GSM1010635, GSM1010636, GSM1010637, GSM1010638, GSM1010639, GSM1010640, GSM1010641, GSM1010642, GSM1010643, GSM1010644, GSM1010645, GSM1010646, GSM1010647, GSM1010648, GSM1010649, GSM1010650, GSM1010651, GSM1010652, GSM1010653, GSM1010654, GSM1010655, GSM1010656, GSM1010657, GSM1010658, GSM1010659, GSM1010660, GSM1010661, GSM1010662, GSM1010663, GSM1010664, GSM1010665, GSM1010666, GSM1010667, GSM1010668, GSM1010669, GSM1010670, GSM1010671, GSM1010672, GSM1010673, GSM1010674, GSM1010675, GSM1010676, GSM1010677, GSM1010678, GSM1010679, GSM1010680, GSM1010681, GSM1010682, GSM1010683, GSM1010684, GSM1010685, GSM1010686, GSM1010687, GSM1010688, GSM1010689, GSM1010690, GSM1010691, GSM1010692, GSM1010693, GSM1010694, GSM1010695, GSM1010696, GSM1010697, GSM1010698, GSM1010699, GSM1010700, GSM1010701, GSM1010702, GSM1010703, GSM1010704, GSM1010705, GSM1010706, GSM1010707, GSM1010708, GSM1010709, GSM1010710, GSM1010711, GSM1010712, GSM1010713, GSM1010714, GSM1010715, GSM1010716, GSM1010717, GSM1198971, GSM1198972, GSM1198973, GSM1198974, GSM1198975, GSM1198976, GSM1198977, GSM1198978, GSM1198979, GSM1198980, GSM1198981, GSM1198982, GSM1211062, GSM1211063, GSM1211064, GSM1211065, GSM1211066, GSM1211067, GSM1211068, GSM1211069, GSM1211070, GSM1211071, GSM1211072, GSM1211073, GSM1211074, GSM1211075, GSM1211076, GSM1211077, GSM1211078, GSM1211079, GSM1211080, GSM1211081, GSM1211082, GSM1211083, GSM1211084, GSM1211085, GSM1211086, GSM1211087, GSM1211088, GSM1211089, GSM1256951, GSM1256952, GSM1256953, GSM1256954, GSM1256955, GSM1256956, GSM1256957
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| Series (4)
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| GSE41212 |
Arabidopsis thaliana seed germination timecourse |
| GSE49399 |
DELLA targets in proliferating leaf tissue |
| GSE49981 |
Reciprocal transcriptional responses in the interaction between Arabidopsis thaliana and Tetranychus urticae. |
| GSE51996 |
Cell-type specific transcriptome analysis to study germline development and reproduction in apomictic Boechera gunnisoniana- ATH1 arrays |
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| Relations |
| Affiliated with |
GPL198 (Alternative CDF [official]) |
| Data table header descriptions |
| ID |
Probe Set Name |
| ORF |
Locus tag |
| DESCRIPTION |
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| SPOT_ID |
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| Data table |
| ID |
ORF |
DESCRIPTION |
SPOT_ID |
| AT1G01010_at |
AT1G01010 |
Symbols: ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688 |
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| AT1G01030_at |
AT1G01030 |
Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905 |
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| AT1G01040_at |
AT1G01040 |
Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23146-31227 FORWARD LENGTH=6251 |
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| AT1G01050_at |
AT1G01050 |
Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976 |
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| AT1G01060_at |
AT1G01060 |
Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33666-37840 REVERSE LENGTH=2704 |
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| AT1G01070_at |
AT1G01070 |
Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40944 REVERSE LENGTH=1311 |
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| AT1G01080_at |
AT1G01080 |
Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319 |
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| AT1G01090_at |
AT1G01090 |
Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627 |
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| AT1G01100_at |
AT1G01100 |
Symbols: | 60S acidic ribosomal protein family | chr1:50090-51108 REVERSE LENGTH=587 |
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| AT1G01110_at |
AT1G01110 |
Symbols: IQD18 | IQ-domain 18 | chr1:52869-54685 FORWARD LENGTH=1439 |
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| AT1G01120_at |
AT1G01120 |
Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899 |
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| AT1G01130_at |
AT1G01130 |
Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375 |
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| AT1G01140_at |
AT1G01140 |
Symbols: CIPK9, SnRK3.12, PKS6 | CBL-interacting protein kinase 9 | chr1:64166-67625 REVERSE LENGTH=1689 |
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| AT1G01150_at |
AT1G01150 |
Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178 |
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| AT1G01160_at |
AT1G01160 |
Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045 |
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| AT1G01170_at |
AT1G01170 |
Symbols: | Protein of unknown function (DUF1138) | chr1:73931-74737 REVERSE LENGTH=515 |
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| AT1G01190_at |
AT1G01190 |
Symbols: CYP78A8 | cytochrome P450, family 78, subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608 |
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| AT1G01200_at |
AT1G01200 |
Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86515-88213 REVERSE LENGTH=982 |
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| AT1G01220_at |
AT1G01220 |
Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91376-95651 FORWARD LENGTH=3532 |
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| AT1G01225_at |
AT1G01225 |
Symbols: | NC domain-containing protein-related | chr1:95987-97407 FORWARD LENGTH=1025 |
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Total number of rows: 21492
Table truncated, full table size 3219 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16112_ATH1121501_At_TAIRG.cdf.gz |
5.5 Mb |
(ftp)(http) |
CDF |
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