GEO help: Mouse over screen elements for information.
Status
Public on Aug 15, 2012
Title
Klug lab - Rhodobacter sphaeroides - 15k array Version 2 (144 sRNA; Agilent-027061)
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Cereibacter sphaeroides 2.4.1 Manufacturer
Agilent technologies
Manufacture protocol
The microarray contains probes against 4,304 protein-coding genes, 79 rRNA and tRNA genes, and 144 intergenic regions. Three antisense probes with a length of 60 nt were designed for each gene or intergenic region, when possible. Microarray construction was performed following the instructions of Agilent (www.chem.agilent.com).
Submission date
Apr 18, 2012
Last update date
Jun 13, 2016
Contact name
Gabriele Klug
E-mail(s)
[email protected] Organization name
Justus-Liebig University Gießen
Department
Molecular- and Microbiology
Street address
Heinrich-Buff-Ring 26-32
City
Gießen
ZIP/Postal code
35392
Country
Germany
Samples (40)
GSM917009 , GSM917010 , GSM1036190 , GSM1036191 , GSM1036192 , GSM1036193
GSM1036194 ,
GSM1036195 ,
GSM1036196 ,
GSM1036197 ,
GSM1146199 ,
GSM1146200 ,
GSM1545819 ,
GSM1545820 ,
GSM1599872 ,
GSM1599873 ,
GSM1640239 ,
GSM1640240 ,
GSM1953710 ,
GSM1953711 ,
GSM1953712 ,
GSM1953714 ,
GSM1953715 ,
GSM1953716 ,
GSM1953717 ,
GSM1953718 ,
GSM1953719 ,
GSM1953720 ,
GSM1953721 ,
GSM1953722 ,
GSM1953723 ,
GSM1953724 ,
GSM1953725 ,
GSM1953726 ,
GSM1953727 ,
GSM1953728 ,
GSM1953729 ,
GSM2095032 ,
GSM2095033 ,
GSM2095034 Series (9)
GSE37381 R. sphaeroides pRKPcrZ vs. R. sphaeroides pRK4352 under low oxygen conditions
GSE42244 Rhodobacter sphaeroides WT 2.4.1 under singlet oxygen stress
GSE47182 Comparative analysis of the response to iron-limitation in the absence of oxygen in R. sphaeroides [Microarray]
GSE47450 Comparative analysis of the response to iron-limitation in the absence of oxygen in R. sphaeroides
GSE63328 The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter in Rhodobacter sphaeroides
GSE65537 IscR of Rhodobacter sphaeroides functions as repressor of genes for iron-sulphur metabolism and represents a new type of iron-sulphur binding protein
GSE67145 R. sphaeroides pRCcsR1-4 vs. R. sphaeroides 2.4.1 pRK415 (aerobic conditions)
GSE75345 Growth-phase dependent gene regulation in the alpha-proteobacterium Rhodobacter sphaeroides
GSE79421 Rhodobacter sphaeroides 2.4.1 pRKSorX144 versus pRK415 under singlet oxygen stress.
Data table header descriptions ID Probe Identifier IMG Systematic Gene annotation (RSP) Description ORF SPOT_ID SEQUENCE probe sequence
Data table ID Probe Identifier IMG Systematic Gene annotation (RSP) Description ORF SPOT_ID SEQUENCE 1
CUST_1_PI417174124
640069300
RSP_4039
Protein of unknown function DUF583
RSP_4039 CCTCGATGGCGATGCGCTCGTGCAGGACATGGGCCTGAACGACGG
2
CUST_1_PI417174124
640069300
RSP_4039
Protein of unknown function DUF583
RSP_4039 CCTCGATGGCGATGCGCTCGTGCAGGACATGGGCCTGAACGACGG
3
CUST_1_PI422709424
3'RSP6008
#N/A
#N/A
--unspecified
GCCCCTCCGCCGAGCGGAGGGGCGAGGTTTATGACTGCCCGGGTTTCGTTCGCCTTGTCT
4
CUST_10_PI417174124
640069303
RSP_7366
"ABC sugar transporter, inner membrane subunit"
RSP_7366 CTTGCGTGGTGATGTAGATGATGTCGAAGAAGCGCAGCAGATCGACCGAG
5
CUST_10_PI417174124
640069303
RSP_7366
"ABC sugar transporter, inner membrane subunit"
RSP_7366 CTTGCGTGGTGATGTAGATGATGTCGAAGAAGCGCAGCAGATCGACCGAG
6
CUST_10_PI422709424
3'RSP6250
#N/A
#N/A
--unspecified
CGGCCAGTCACACACGGAGATTCCGATTGACGCAATGCTAAAACATCAACCGTGCTTTAT
7
CUST_100_PI417174124
640069333
RSP_4004
Short-chain dehydrogenase/reductase SDR( EC:1.1.1.100 )
RSP_4004 CATCGCTTCCACGAAGGCCTCGTTCAGCTCCGTCTCGATCCAGCC
8
CUST_100_PI417174124
640069333
RSP_4004
Short-chain dehydrogenase/reductase SDR( EC:1.1.1.100 )
RSP_4004 CATCGCTTCCACGAAGGCCTCGTTCAGCTCCGTCTCGATCCAGCC
9
CUST_1000_PI417174124
640069620
RSP_1472
hypothetical protein
RSP_1472 CTGAATTCCATGTCGTTGATGAAGACCGACCGGCTCTCGCGGCTGATCATCAG
10
CUST_1000_PI417174124
640069620
RSP_1472
hypothetical protein
RSP_1472 CTGAATTCCATGTCGTTGATGAAGACCGACCGGCTCTCGCGGCTGATCATCAG
11
CUST_10000_PI417174124
640709980
RSP_4305
( tRNA )
RSP_4305 GAATCGAACCCTCGTCGTAAGCTTGGGAAGCTTCTGCTCTACCATTGAGCTAC
12
CUST_10001_PI417174124
640709981
RSP_4327
( tRNA )
RSP_4327 GATTCGAACCAACGAATGGCGGTACCAAAAACCGCTGCCTTACCACTTG
13
CUST_10002_PI417174124
640709982
RSP_4346
( tRNA )
RSP_4346 CTGGATTCGAACCAACGAATGGCGGTACCAAAAACCGCTGCCTTACC
14
CUST_10003_PI417174124
640709983
RSP_4328
( tRNA )
RSP_4328 CGATAACGGATTTGAACCGCTGACATCTTCGATGTGAACGAAGCGCTCTACC
15
CUST_10004_PI417174124
640709984
RSP_4326
( tRNA )
RSP_4326 GTCGGACTCGAACCGACACTCCGTGAGGAAAGGGTGTTTGAGACC
16
CUST_10005_PI417174124
640709985
RSP_4317
( tRNA )
RSP_4317 GACCCCCGGCGTGACAGGCCGGTACTCTAACCAACTGAGCTACAAC
17
CUST_10006_PI417174124
640709986
RSP_4316
( tRNA )
RSP_4316 GACCCCCGGCGTGACAGGCCGGTACTCTAACCGACTGAGCTACAAC
18
CUST_10007_PI417174124
640709987
RSP_4304
( tRNA )
RSP_4304 GATTTGAACGAACGACCTTCGCTTTACAAGAGCGCTGCACTACCACTGTGCTAAC
19
CUST_10008_PI417174124
640709989
RSP_4323
( tRNA )
RSP_4323 TACCGGAATCGAACCGGTCTTCACGGATTTGCAATCCGGTTAATTCCATTGAAAATAAAG
20
CUST_10009_PI417174124
640709990
RSP_4322
( tRNA )
RSP_4322 GAATCGAACCGGTCTTCACGGATTTGCAATCCGCTGCGTAACCTCTC
15208 2090 Kbytes .Supplementary data files not provided
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