GEO help: Mouse over screen elements for information.
Status
Public on Nov 30, 2011
Title
Agilent-022830 RIKEN_AT_sORF0902
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
This microarray targets 34546 mRNA-like transcripts inclusing 26254 annotated coding genes (TAIR8), 6,946 coding sORFs identified at Hanada et al (Genome Research 2007 17:632-640) and 1,346 novel transcripts verified by full length cDNAs. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.
Submission date
Nov 29, 2011
Last update date
Dec 06, 2011
Contact name
Kousuke Hanada
E-mail(s)
[email protected] Organization name
Kyushu Institute Technology
Department
Department of Bioscience and Bioinformatics
Street address
680-4 Kawazu
City
Iizuka
State/province
Fukuoka
ZIP/Postal code
820-8502
Country
Japan
Samples (279)
GSM843609 , GSM843610 , GSM843611 , GSM843612 , GSM843613 , GSM843614
GSM843615 ,
GSM843616 ,
GSM843617 ,
GSM843618 ,
GSM843619 ,
GSM843620 ,
GSM843621 ,
GSM843622 ,
GSM843623 ,
GSM843624 ,
GSM843625 ,
GSM843626 ,
GSM843627 ,
GSM843628 ,
GSM843629 ,
GSM843630 ,
GSM843631 ,
GSM843632 ,
GSM843633 ,
GSM843634 ,
GSM843635 ,
GSM843636 ,
GSM843637 ,
GSM843638 ,
GSM843639 ,
GSM843640 ,
GSM843641 ,
GSM843642 ,
GSM843643 ,
GSM843644 ,
GSM843645 ,
GSM843646 ,
GSM843647 ,
GSM843648 ,
GSM843649 ,
GSM843650 ,
GSM843651 ,
GSM843652 ,
GSM843653 ,
GSM843654 ,
GSM843655 ,
GSM843656 ,
GSM843657 ,
GSM843658 ,
GSM843659 ,
GSM843660 ,
GSM843661 ,
GSM843662 ,
GSM843663 ,
GSM843664 ,
GSM843665 ,
GSM843666 ,
GSM843667 ,
GSM843668 ,
GSM843669 ,
GSM843670 ,
GSM843671 ,
GSM843672 ,
GSM843673 ,
GSM843674 ,
GSM843675 ,
GSM843676 ,
GSM843677 ,
GSM843678 ,
GSM843679 ,
GSM843680 ,
GSM843681 ,
GSM843682 ,
GSM843683 ,
GSM843684 ,
GSM843685 ,
GSM843686 ,
GSM843687 ,
GSM843688 ,
GSM843689 ,
GSM843690 ,
GSM843691 ,
GSM843692 ,
GSM843693 ,
GSM843694 ,
GSM843695 ,
GSM843696 ,
GSM843697 ,
GSM843698 ,
GSM843699 ,
GSM843700 ,
GSM843701 ,
GSM843702 ,
GSM843703 ,
GSM843704 ,
GSM843705 ,
GSM843706 ,
GSM843707 ,
GSM1210843 ,
GSM1210844 ,
GSM1210845 ,
GSM1210846 ,
GSM1210847 ,
GSM1210848 ,
GSM1210849 ,
GSM1210850 ,
GSM1210851 ,
GSM1210852 ,
GSM1210853 ,
GSM1210854 ,
GSM1210855 ,
GSM1210856 ,
GSM1210857 ,
GSM1210858 ,
GSM1210859 ,
GSM1210860 ,
GSM1210861 ,
GSM1210862 ,
GSM1210863 ,
GSM1210864 ,
GSM1210865 ,
GSM1210866 ,
GSM1210867 ,
GSM1210868 ,
GSM1210869 ,
GSM1210870 ,
GSM1210871 ,
GSM1210872 ,
GSM1210873 ,
GSM1210874 ,
GSM2389519 ,
GSM2389520 ,
GSM2389521 ,
GSM2389522 ,
GSM2389523 ,
GSM2389524 ,
GSM2389525 ,
GSM2389526 ,
GSM2389527 ,
GSM2389528 ,
GSM2389529 ,
GSM2389530 ,
GSM2389531 ,
GSM2389532 ,
GSM2389533 ,
GSM2389534 ,
GSM2389535 ,
GSM2389536 ,
GSM2389537 ,
GSM2389538 ,
GSM2389539 ,
GSM2389540 ,
GSM2389541 ,
GSM2389542 ,
GSM2389543 ,
GSM2389544 ,
GSM2389545 ,
GSM2389546 ,
GSM2389547 ,
GSM2389548 ,
GSM2389549 ,
GSM2389550 ,
GSM2389551 ,
GSM2389552 ,
GSM2389553 ,
GSM2389554 ,
GSM2389555 ,
GSM2389556 ,
GSM2389557 ,
GSM2389558 ,
GSM2389559 ,
GSM2389560 ,
GSM2389561 ,
GSM2389562 ,
GSM2389563 ,
GSM2389564 ,
GSM2389565 ,
GSM2389566 ,
GSM2389567 ,
GSM2389568 ,
GSM2389569 ,
GSM2389570 ,
GSM2389571 ,
GSM2389572 ,
GSM2389573 ,
GSM2389574 ,
GSM2389575 ,
GSM2389576 ,
GSM2389577 ,
GSM2389578 ,
GSM2389579 ,
GSM2389580 ,
GSM2389581 ,
GSM2389582 ,
GSM2389583 ,
GSM2389584 ,
GSM2389585 ,
GSM2389586 ,
GSM2389587 ,
GSM2389588 ,
GSM2389589 ,
GSM2389590 ,
GSM2389591 ,
GSM2389592 ,
GSM2389593 ,
GSM2389594 ,
GSM2389595 ,
GSM2389596 ,
GSM2389597 ,
GSM2389598 ,
GSM2389599 ,
GSM2389600 ,
GSM2389601 ,
GSM2389602 ,
GSM2389603 ,
GSM2389604 ,
GSM2389605 ,
GSM2389606 ,
GSM2389607 ,
GSM2389608 ,
GSM2389609 ,
GSM2389610 ,
GSM2389611 ,
GSM2389612 ,
GSM2389613 ,
GSM2389614 ,
GSM2389615 ,
GSM2389616 ,
GSM2389617 ,
GSM2389618 ,
GSM2389619 ,
GSM2389620 ,
GSM2389621 ,
GSM2389622 ,
GSM2389623 ,
GSM2389624 ,
GSM2389625 ,
GSM2389626 ,
GSM2389627 ,
GSM2389628 ,
GSM2389629 ,
GSM2389630 ,
GSM2389631 ,
GSM2389632 ,
GSM2389633 ,
GSM2389634 ,
GSM2389635 ,
GSM2389636 ,
GSM2389637 ,
GSM2389638 ,
GSM2389639 ,
GSM2389640 ,
GSM2389641 ,
GSM2389642 ,
GSM2389643 ,
GSM2389644 ,
GSM2389645 ,
GSM2389646 ,
GSM2389647 ,
GSM2389648 ,
GSM2389649 ,
GSM2389650 ,
GSM2389651 ,
GSM2389652 ,
GSM2389653 ,
GSM2389654 ,
GSM2389655 ,
GSM2389656 ,
GSM2389657 ,
GSM2389658 ,
GSM2389659 ,
GSM2389660 ,
GSM2389661 ,
GSM2389662 ,
GSM2389663 ,
GSM2389664 ,
GSM2389665 ,
GSM2389666 Series (3)
GSE34188 Transcriptome analysis of annotated coding genes and sORF in 16 organs and 17 environmental conditions at A. thaliana
GSE49960 Transcriptome analysis of annotated coding genes and sORF under elevated CO2
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana
Data table header descriptions ID Agilent feature number
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ORF ORF Name
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
Data table ID NAME SPOT_ID CONTROL_TYPE GB_ACC ORF GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE ATRIKEN31987
ATRIKEN31987
ATRIKEN31987
FALSE
unknown
NEW_TU_6195|sORF|chr5_+_24367461-24367580
chr5:24367461-24367580
GC(40):NO_Xhybri
CCCAAAGCCGGAGGAAGAGGAGACTATGAATTAGGAATTTATGATCATTTGGTGGTATTT
ATRIKEN13566
ATRIKEN13566
ATRIKEN13566
FALSE
AT3G53520 UXS1_(UDP-GLUCURONIC_ACID_DECARBOXYLASE_1);_catalytic
AT3G53520|TAIR|AT3G53520.1
chr3:19852613-19855035
GC(42):NO_Xhybri
ACCATTCGCAAACACCCAATGACTGTTTATGGTGATGGAAAACAGACTCGTAGCTTTCAA
ATRIKEN08029
ATRIKEN08029
ATRIKEN08029
FALSE
AT2G17880 DNAJ_heat_shock_protein,_putative
AT2G17880|TAIR|AT2G17880.1
chr2:7774740-7774258
GC(40):NO_Xhybri
CTGCATCACAAAACCCAAATCGGAACTTAAACCAAAAGACAAACAAAAACGCCGTCGTTT
ATRIKEN27822
ATRIKEN27822
ATRIKEN27822
FALSE
unknown
NEW_TU_1070|sORF|chr2_+_239319-239447
chr2:239319-239447
GC(40):NO_Xhybri
AATATCAATGAAAGTCACAGCTGGCAGGAAATCTACGGTATCGTTATCTGGTGGACTTTT
ATRIKEN27713
ATRIKEN27713
ATRIKEN27713
FALSE
unknown
NEW_TU_952|sORF|chr2_+_5668190-5668303
chr2:5668190-5668303
GC(40):NO_Xhybri
CTATATGGTAAACTCCGCGAAGCCGAGGATAGGTGGAAATAAAGTAAATGTGGGTTTAAT
ATRIKEN10969
ATRIKEN10969
ATRIKEN10969
FALSE
AT2G13295 Encodes_a_Protease_inhibitor/seed_storage/LTP_family_protein
AT2G13295|TAIR|AT2G13295.1
chr2:5521717-5521388
GC(43):NO_Xhybri
CAAAACTTTGACTTTTATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTC
ATRIKEN20199
ATRIKEN20199
ATRIKEN20199
FALSE
AT4G26780 AR192;_adenyl-nucleotide_exchange_factor/_chaperone_binding_/_protein_binding_/_protein_homodimerization
AT4G26780|TAIR|AT4G26780.1
chr4:13486566-13485072
GC(42):NO_Xhybri
ATTCATTAGATGAACAAGATCTCCCATAAGTTGCTGGACATGGCATTTGCAGGGGAAATC
ATRIKEN30075
ATRIKEN30075
ATRIKEN30075
FALSE
unknown
NEW_TU_3849|sORF|chr1_-_3269217-3269342
chr1:3269342-3269217
GC(40):NO_Xhybri
CGGTTATGATGGTAGCCATCAAGTGACATACGACCACAAAACCTTGAAAATGACTTTGTA
ATRIKEN30830
ATRIKEN30830
ATRIKEN30830
FALSE
unknown
NEW_TU_4763|sORF|chr4_+_3449846-3449944
chr4:3449846-3449944
GC(37):NO_Xhybri
AAAGCTCACGCTGAAAATGCAATAGATGGTTCATCTATATTAAAGTGGAAGGGATCTTGA
ATRIKEN07335
ATRIKEN07335
ATRIKEN07335
FALSE
AT2G48090 unknown_protein
AT2G48090|TAIR|AT2G48090.1
chr2:19676799-19676290
GC(42):NO_Xhybri
TCTTCCACCATTGCTCGTGCTAACCCGACTTTCAAGTGATGGATTTCGACAAATTAATGA
ATRIKEN13579
ATRIKEN13579
ATRIKEN13579
FALSE
AT3G57860 UVI4-LIKE_(UV-B-INSENSITIVE_4-LIKE)
AT3G57860|TAIR|AT3G57860.1
chr3:21437710-21438798
GC(42):NO_Xhybri
ATCCTTACTTAGGAGAAGAGACCATAGAGGTATATCTGCTTAAAGGTTCCTGCACAGTGA
ATRIKEN14133
ATRIKEN14133
ATRIKEN14133
FALSE
AT3G61750 auxin-responsive_protein_-related
AT3G61750|TAIR|AT3G61750.1
chr3:22870229-22868872
GC(40):NO_Xhybri
AATGGAGGAGATGGATGGAAAATTGGATATGGATTTGTTCTGTCAGTCACGTTACTTGCT
ATRIKEN11487
ATRIKEN11487
ATRIKEN11487
FALSE
AT3G01730 unknown_protein
AT3G01730|TAIR|AT3G01730.1
chr3:266635-266898
GC(38):NO_Xhybri
CACCTCAACATTGATTAGTGCCTTGGCTTTCGTCTTCTAATATAAGACGTGTTTTTCTTC
ATRIKEN20010
ATRIKEN20010
ATRIKEN20010
FALSE
AT4G02030 similar_to_unknown_protein_[Arabidopsis_thaliana]_(TAIR:AT1G21170.1);_similar_to_unnamed_protein_product_[Vitis_vinifera]_(GB:CAO40112.1);_similar_to_unknown_protein_[Oryza_sativa_(japonica_cultivar-group)]_(GB:AAR07074.1);_similar_to_unknown_protein_[Oryza_sativa_(japonica_cultivar-group)]_(GB:AAP03421.1);_contains_domain_PTHR15954_(PTHR15954)
AT4G02030|TAIR|AT4G02030.1
chr4:892262-897175
GC(40):NO_Xhybri
TTCACAAAGAGCTCGTAGTCAGCTTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAA
ATRIKEN12111
ATRIKEN12111
ATRIKEN12111
FALSE
AT3G62910 APG3_(ALBINO_AND_PALE_GREEN);_translation_release_factor
AT3G62910|TAIR|AT3G62910.1
chr3:23271361-23268636
GC(37):NO_Xhybri
CTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGATCATAGGC
ATRIKEN17481
ATRIKEN17481
ATRIKEN17481
FALSE
AT4G18180 glycoside_hydrolase_family_28_protein_/_polygalacturonase_(pectinase)_family_protein
AT4G18180|TAIR|AT4G18180.1
chr4:10065637-10067328
GC(40):NO_Xhybri
TCTTGTAGAAACGTTAGAGCTAATTACATTGGGACTCAAATCCCACCTCCATGTCACTAA
ATRIKEN03251
ATRIKEN03251
ATRIKEN03251
FALSE
AT1G08430 ALMT1/ATALMT1_(AL-ACTIVATED_MALATE_TRANSPORTER_1);_malate_transmembrane_transporter/
AT1G08430|TAIR|AT1G08430.1
chr1:2658797-2661026
GC(40):NO_Xhybri
AAGCATTGGTCGTGCCATGCCAATAGATTCTCATGAAGATCATCATGTTGTCACAGTTTT
ATRIKEN01799
ATRIKEN01799
ATRIKEN01799
FALSE
AT1G29390 COR314-TM2_(cold_regulated_314_thylakoid_membrane_2)
AT1G29390|TAIR|AT1G29390.1
chr1:10287864-10286395
GC(42):NO_Xhybri
GGAAACAGGAAGGTGCTATCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATT
ATRIKEN23687
ATRIKEN23687
ATRIKEN23687
FALSE
AT5G19390 pleckstrin_homology_(PH)_domain-containing_protein_/_RhoGAP_domain-containing_protein
AT5G19390|TAIR|AT5G19390.1
chr5:6531908-6538208
GC(42):NO_Xhybri
TCCCAAGATTTCATACACCGGCCATCATCTCCACCTTGGAACTAACAACATGAGAAAAAA
ATRIKEN21530
ATRIKEN21530
ATRIKEN21530
FALSE
AT5G47470 nodulin_MtN21_family_protein
AT5G47470|TAIR|AT5G47470.1
chr5:19271825-19273605
GC(38):NO_Xhybri
TTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCTTTTGTCTTGA
34415 8214 Kbytes .Supplementary data files not provided
Less...
More...