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Platform GPL1054 Query DataSets for GPL1054
Status Public on Mar 03, 2004
Title NIAID - Hsbb
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
 
Description Printing by NIAID / Microarray Research Facility
Surface type: non-adsorptive, epoxy-coated glass
Attachment: covalent
Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 48 SMP3 print tips from Telechem (http://www.arrayit.com ). The human microarray (Hsbb) probe set is based on 70mer oligonucleotides from Qiagen's Human Genome Oligo Set V2.0 ( http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov/
Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved to a normalized 25 micromolar concentration in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauryl sarcosyl). The Hsbb microarray spot densities are 190 microns (center-to-center). The microarrays are printed on MWG Epoxy Slides (MWG Biotech Inc., # 1150-000000) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.
 
Submission date Mar 01, 2004
Last update date Oct 07, 2011
Contact name Michael Wilson
E-mail(s) [email protected]
Phone 301-496-4287
URL http://madb.niaid.nih.gov/
Organization name National Institute of Allergy and Infectious Diseases
Department Division of Intramural Research
Lab Research Technologies Branch / Microarray Research Facility
Street address 50 South Drive, Room 5509
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (111) GSM617100, GSM617101, GSM617102, GSM617103, GSM617104, GSM617105 
Series (4)
GSE25113 Role for ISGF3II in the Antiviral Activity of IFN-gamma
GSE29790 BID is critical for IFN-alpha-induced cell death
GSE31894 Regulation of global gene expression in human Loa loa infection is a function of chronicity

Data table header descriptions
ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
OLIGO_ID Oligo identifier
GENE Gene Name
UniGene UniGene Identifier Build #Hs.166
DESCRIPTION Gene Description
SPOT_ID spot identifier

Data table
ID MADB_WELL_ID OLIGO_ID GENE UniGene DESCRIPTION SPOT_ID
1310604_1 1310604 MRF3_50-a12 Tamara prelabeled MRF3_50 Control_4 Tamara prelabeled MRF3_50 Control_4
1310628_1 1310628 MRF3_50-c12 Tamara prelabeled MRF3_50 Control_4 Tamara prelabeled MRF3_50 Control_4
1310652_1 1310652 MRF1_50-e12 MRF1_50 Control_4 MRF1_50 Control_4
1310676_1 1310676 MRF2_50-g12 MRF2_50 Control_4 MRF2_50 Control_4
1310598_1 1310598 AMB_6F AMB_6F Control_3 Ambion spiked standard AMB_6F Control_3 Ambion spiked standard
1310622_1 1310622 Alien_10 Alien_10 Control_3 Stratagene spiked standard Alien_10 Control_3 Stratagene spiked standard
1310646_1 1310646 Empty/Unknown EmptyWell EmptyWell
1310670_1 1310670 Empty/Unknown EmptyWell EmptyWell
1173596_1 1173596 H200000106 ADM 441047 adrenomedullin ADM adrenomedullin
1173620_1 1173620 H200000130 ISL1 505 ISL1 transcription factor, LIM/homeodomain, (islet-1) ISL1 ISL1 transcription factor, LIM/homeodomain, (islet-1)
1173644_1 1173644 H200000154 LGALS3 411701 lectin, galactoside-binding, soluble, 3 (galectin 3) LGALS3 lectin, galactoside-binding, soluble, 3 (galectin 3)
1173668_1 1173668 H200000178 THRA 724 thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) THRA thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)
1173590_1 1173590 H200000100 OPRD1 372 opioid receptor, delta 1 OPRD1 opioid receptor, delta 1
1173614_1 1173614 H200000124 ATF3 460 activating transcription factor 3 ATF3 activating transcription factor 3
1173638_1 1173638 H200000148 APOB 280226 apolipoprotein B (including Ag(x) antigen) APOB apolipoprotein B (including Ag(x) antigen)
1173662_1 1173662 H200000172 CSTB 695 cystatin B (stefin B) CSTB cystatin B (stefin B)
1173980_1 1173980 H200000486 KLKB1 1901 kallikrein B, plasma (Fletcher factor) 1 KLKB1 kallikrein B, plasma (Fletcher factor) 1
1174004_1 1174004 H200000510 SRY 1992 sex determining region Y SRY sex determining region Y
1174028_1 1174028 H200000534 PTGER2 2090 prostaglandin E receptor 2 (subtype EP2), 53kDa PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa
1174052_1 1174052 H200000558 PROL3 2207 proline rich 3 PROL3 proline rich 3

Total number of rows: 22332

Table truncated, full table size 2733 Kbytes.




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