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Status
Public on Mar 03, 2004
Title
NIAID - Hsbb
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens
Description
Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, epoxy-coated glass Attachment: covalent Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 48 SMP3 print tips from Telechem (http://www.arrayit.com ). The human microarray (Hsbb) probe set is based on 70mer oligonucleotides from Qiagen's Human Genome Oligo Set V2.0 ( http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov/ Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved to a normalized 25 micromolar concentration in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauryl sarcosyl). The Hsbb microarray spot densities are 190 microns (center-to-center). The microarrays are printed on MWG Epoxy Slides (MWG Biotech Inc., # 1150-000000) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.
Submission date
Mar 01, 2004
Last update date
Oct 07, 2011
Contact name
Michael Wilson
E-mail(s)
[email protected]
Phone
301-496-4287
URL
http://madb.niaid.nih.gov/
Organization name
National Institute of Allergy and Infectious Diseases
Department
Division of Intramural Research
Lab
Research Technologies Branch / Microarray Research Facility
Street address
50 South Drive, Room 5509
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (111)
GSM617100 , GSM617101 , GSM617102 , GSM617103 , GSM617104 , GSM617105
GSM738267 ,
GSM738268 ,
GSM738269 ,
GSM738270 ,
GSM738271 ,
GSM738272 ,
GSM738273 ,
GSM738274 ,
GSM738275 ,
GSM738276 ,
GSM738277 ,
GSM738278 ,
GSM738279 ,
GSM738280 ,
GSM738281 ,
GSM738282 ,
GSM738283 ,
GSM738284 ,
GSM738285 ,
GSM738286 ,
GSM738287 ,
GSM738288 ,
GSM738289 ,
GSM790674 ,
GSM790675 ,
GSM790676 ,
GSM790677 ,
GSM790678 ,
GSM790679 ,
GSM790680 ,
GSM790681 ,
GSM790682 ,
GSM790683 ,
GSM790684 ,
GSM790685 ,
GSM790686 ,
GSM790687 ,
GSM790688 ,
GSM790689 ,
GSM790690 ,
GSM790691 ,
GSM790692 ,
GSM790693 ,
GSM790694 ,
GSM790695 ,
GSM790696 ,
GSM790697 ,
GSM790698 ,
GSM790699 ,
GSM790700 ,
GSM790701 ,
GSM790702 ,
GSM790703 ,
GSM790704 ,
GSM790705 ,
GSM790706 ,
GSM790707 ,
GSM790708 ,
GSM790709 ,
GSM790710 ,
GSM790711 ,
GSM790712 ,
GSM790713 ,
GSM790714 ,
GSM790715 ,
GSM790716 ,
GSM790717 ,
GSM790718 ,
GSM790719 ,
GSM790720 ,
GSM790721 ,
GSM805264 ,
GSM805265 ,
GSM805266 ,
GSM805267 ,
GSM805268 ,
GSM805269 ,
GSM805270 ,
GSM805271 ,
GSM805272 ,
GSM805273 ,
GSM805274 ,
GSM805275 ,
GSM805276 ,
GSM805277 ,
GSM805278 ,
GSM805279 ,
GSM805280 ,
GSM805281 ,
GSM805282 ,
GSM805283 ,
GSM805284 ,
GSM805285 ,
GSM805286 ,
GSM805287 ,
GSM805288 ,
GSM805289 ,
GSM805290 ,
GSM805291 ,
GSM805292 ,
GSM805293 ,
GSM805294 ,
GSM805295 ,
GSM805296 ,
GSM805297
Series (4)
GSE25113
Role for ISGF3II in the Antiviral Activity of IFN-gamma
GSE29790
BID is critical for IFN-alpha-induced cell death
GSE31894
Regulation of global gene expression in human Loa loa infection is a function of chronicity
GSE32517
Identification of Alpha Interferon-Induced Genes Associated with Antiviral Activity in Daudi Cells and Characterization of IFIT3 as a Novel Antiviral Gene
Data table header descriptions
ID
NIH mAdb well id plus replicate number
MADB_WELL_ID
NIH mAdb plate-well identifier for oligo sample
OLIGO_ID
Oligo identifier
GENE
Gene Name
UniGene
UniGene Identifier Build #Hs.166
DESCRIPTION
Gene Description
SPOT_ID
spot identifier
Data table
ID
MADB_WELL_ID
OLIGO_ID
GENE
UniGene
DESCRIPTION
SPOT_ID
1310604_1
1310604
MRF3_50-a12
Tamara prelabeled MRF3_50 Control_4
Tamara prelabeled MRF3_50 Control_4
1310628_1
1310628
MRF3_50-c12
Tamara prelabeled MRF3_50 Control_4
Tamara prelabeled MRF3_50 Control_4
1310652_1
1310652
MRF1_50-e12
MRF1_50 Control_4
MRF1_50 Control_4
1310676_1
1310676
MRF2_50-g12
MRF2_50 Control_4
MRF2_50 Control_4
1310598_1
1310598
AMB_6F
AMB_6F Control_3 Ambion spiked standard
AMB_6F Control_3 Ambion spiked standard
1310622_1
1310622
Alien_10
Alien_10 Control_3 Stratagene spiked standard
Alien_10 Control_3 Stratagene spiked standard
1310646_1
1310646
Empty/Unknown
EmptyWell
EmptyWell
1310670_1
1310670
Empty/Unknown
EmptyWell
EmptyWell
1173596_1
1173596
H200000106
ADM
441047
adrenomedullin
ADM adrenomedullin
1173620_1
1173620
H200000130
ISL1
505
ISL1 transcription factor, LIM/homeodomain, (islet-1)
ISL1 ISL1 transcription factor, LIM/homeodomain, (islet-1)
1173644_1
1173644
H200000154
LGALS3
411701
lectin, galactoside-binding, soluble, 3 (galectin 3)
LGALS3 lectin, galactoside-binding, soluble, 3 (galectin 3)
1173668_1
1173668
H200000178
THRA
724
thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)
THRA thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)
1173590_1
1173590
H200000100
OPRD1
372
opioid receptor, delta 1
OPRD1 opioid receptor, delta 1
1173614_1
1173614
H200000124
ATF3
460
activating transcription factor 3
ATF3 activating transcription factor 3
1173638_1
1173638
H200000148
APOB
280226
apolipoprotein B (including Ag(x) antigen)
APOB apolipoprotein B (including Ag(x) antigen)
1173662_1
1173662
H200000172
CSTB
695
cystatin B (stefin B)
CSTB cystatin B (stefin B)
1173980_1
1173980
H200000486
KLKB1
1901
kallikrein B, plasma (Fletcher factor) 1
KLKB1 kallikrein B, plasma (Fletcher factor) 1
1174004_1
1174004
H200000510
SRY
1992
sex determining region Y
SRY sex determining region Y
1174028_1
1174028
H200000534
PTGER2
2090
prostaglandin E receptor 2 (subtype EP2), 53kDa
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa
1174052_1
1174052
H200000558
PROL3
2207
proline rich 3
PROL3 proline rich 3
Total number of rows: 22332 Table truncated, full table size 2733 Kbytes .
Supplementary data files not provided