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Have you explored our new Comparative Genome Viewer (CGV) yet?

URL for current configuration
This URL is a temporary URL and is valid approximately for 90 days.

Rattus norvegicus

(Norway rat)
Assembly:

Rattus norvegicus

(Norway rat)

Assembly: GRCr8

(GCF_036323735.1)
Search assembly
Examples
  • chr1:1,500,000-2,000,000
  • chr2: 1.5M - 2M
  • chr2: 1.5M-2,540.2K
  • 2:1,500,000-2,000,000
  • 3: 21.33M - 22.01M
  • 3: 21.335M..21.337M
  • chr1:1,500,000 / 200
  • chr1:101,500,200
  • 1:101,500,200
  • 1:1,500K/0.5K

Assemblies

Assembly
Select an assembly to change view

Locations for Gene Rcc1

No regions for assembly
  • SequenceLocation
  • NC_086023.1149,810,037 - 149,828,475

Ideogram View

Tracks and User Data

Name Location

Supported File/Data types

  • Uploaded tracks
    • BED
    • GFF3
    • GTF
    • GVF
    • VCF
    • HGVS
    • WIG
    • ASN.1 (text and binary)
  • Remote tracks
    • Remote BAM.bai or CSI index file present at same location
    • Remote VCFun-indexed up to 2000 lines or with an index file present at the same location
    • BigBed
    • BigWig

BLAST

Details
Alignments
Only alignments on the current assembly are shown

Tracks by Accession

Assembly Region Details

Features of Interest
Other sequence representations
for assembly region(s) in view- none -- loading …
Sequence IDType
Back to region
Checking for GRC genome issues ...Add Track
Not applicable for this organism/assembly

History

Select gene from history
 Collapse sidebar [NC_086023.1:149,808,192 - 149,830,318
Ideogram of chromosome '5'
Region Gene
Transcript
Exons: click an exon to zoom in, mouse over to see details
No exons
Trnau1ap Exon Navigator: There are no genes in the region LOC120102993

BLAST Alignment Inspector

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