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    LOC127822785 H3K4me1 hESC enhancer GRCh37_chr11:119564585-119565134 [ Homo sapiens (human) ]

    Gene ID: 127822785, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC127822785
    Gene description
    H3K4me1 hESC enhancer GRCh37_chr11:119564585-119565134
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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    Genomic context

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    See LOC127822785 in Genome Data Viewer
    Location:
    chromosome: 11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (119693875..119694424)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (119716749..119717298)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (119564585..119565134)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119507935-119508436 Neighboring gene uncharacterized LOC124900303 Neighboring gene nectin cell adhesion molecule 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:119520624-119521191 Neighboring gene RNA, U6 small nuclear 1123, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119535306-119535844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119535845-119536381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5633 Neighboring gene Sharpr-MPRA regulatory region 6199 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119560233-119560733 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119562395-119563120 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119563121-119563847 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119565135-119565682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119566971-119567596 Neighboring gene NECTIN1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119584957-119585597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119588639-119589412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119594703-119595203 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:119597492-119598434 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr11:119599234-119600095 and GRCh37_chr11:119600096-119600956 Neighboring gene NECTIN1 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_124225.1 

      Range
      101..650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      119693875..119694424
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      119716749..119717298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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