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    LOC127402033 H3K4me1 hESC enhancer GRCh37_chr4:184938341-184938840 [ Homo sapiens (human) ]

    Gene ID: 127402033, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC127402033
    Gene description
    H3K4me1 hESC enhancer GRCh37_chr4:184938341-184938840
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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    Genomic context

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    See LOC127402033 in Genome Data Viewer
    Location:
    chromosome: 4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (184017188..184017687)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (187361082..187361581)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (184938341..184938840)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377581 Neighboring gene uncharacterized LOC124900824 Neighboring gene NANOG hESC enhancer GRCh37_chr4:184720870-184721431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184746134-184746634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184746635-184747135 Neighboring gene storkhead box 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184783325-184783826 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:184799524-184800276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:184826003-184826712 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:184826713-184827420 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:184841522-184842187 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:184845527-184846026 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:184894757-184894946 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:184909090-184909876 Neighboring gene uncharacterized LOC107986330 Neighboring gene very low density lipoprotein receptor pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_103992.1 

      Range
      101..600
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      184017188..184017687
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      187361082..187361581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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