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    ybeD DUF493 domain-containing protein YbeD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945220, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybeD
    Official Full Name
    DUF493 domain-containing protein YbeD
    Primary source
    ECOCYC:EG11592
    Locus tag
    b0631
    See related
    ASAP:ABE-0002162
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0624
    Summary
    Binds TrxA (Kumar, 2004). [More information is available at EcoGene: EG11592]. YbeD is a conserved protein of unknown function. [More information is available at EcoCyc: EG11592].
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    Genomic context

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    Sequence:
    NC_000913.3 (662379..662642, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YbeF Neighboring gene lipoyl(octanoyl) transferase Neighboring gene D-alanyl-D-alanine carboxypeptidase DacA Neighboring gene rare lipoprotein RlpA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of YbeD in Escherichia coli Enhances Thermotolerance. Kim S, et al. J Microbiol Biotechnol, 2019 Mar 28. PMID 30939630
    2. Lipoic acid metabolism in Escherichia coli: sequencing and functional characterization of the lipA and lipB genes. Reed KE, et al. J Bacteriol, 1993 Mar. PMID 8444795, Free PMC Article
    3. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
    4. Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli. Kumar JK, et al. Proc Natl Acad Sci U S A, 2004 Mar 16. PMID 15004283, Free PMC Article
    5. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF493 domain-containing protein YbeD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      662379..662642 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415164.1 DUF493 domain-containing protein YbeD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415164.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376TK89
      Conserved Domains (1) summary
      PRK04998
      Location:1 → 87
      PRK04998; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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