U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC9310794 phospholipase D gamma 1 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9310794, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9310794
    Gene description
    phospholipase D gamma 1
    Locus tag
    ARALYDRAFT_489999
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PLDGAMMA1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9310794 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (21565766..21570109, complement)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA synthase Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene phospholipase D gamma 1 Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    phospholipase D gamma 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      21565766..21570109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002874681.2 → XP_002874727.1  phospholipase D gamma 1 isoform X1

      See identical proteins and their annotated locations for XP_002874727.1

      UniProtKB/TrEMBL
      D7M0A9
      Conserved Domains (4) summary
      cd04015
      Location:39 → 189
      C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
      PLN03008
      Location:37 → 860
      PLN03008; Phospholipase D delta
      pfam12357
      Location:784 → 852
      PLD_C; Phospholipase D C terminal
      cl15239
      Location:540 → 757
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

    2. XM_021022425.1 → XP_020878084.1  phospholipase D gamma 1 isoform X2

      Conserved Domains (1) summary
      cl26365
      Location:37 → 623
      PLN03008; Phospholipase D delta
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials