U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844103, updated on 18-Sep-2024

    Summary

    Official Full Name
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Primary source
    TAIR:AT1G77670
    Locus tag
    AT1G77670
    See related
    Araport:AT1G77670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5M16.26; T5M16_26
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (29188843..29191079, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Histone H3 K4-specific methyltransferase SET7/9 family protein Neighboring gene Ribonuclease II/R family protein Neighboring gene Plant thionin family protein

    General gene information

    NM_106416.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    NP_177890.1
    • Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.3); Has 49407 Blast hits to 49405 proteins in 3078 species: Archae - 1141; Bacteria - 34862; Metazoa - 771; Fungi - 871; Plants - 1354; Viruses - 0; Other Eukaryotes - 10408 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29188843..29191079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106416.2NP_177890.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177890.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W825, Q8VXZ8, Q9CAP1
      Conserved Domains (2) summary
      cd00609
      Location:82434
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN00175
      Location:26438
      PLN00175; aminotransferase family protein; Provisional