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    SNX18 sorting nexin 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704669, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX18provided by VGNC
    Official Full Name
    sorting nexin 18provided by VGNC
    Primary source
    VGNC:VGNC:77738
    See related
    Ensembl:ENSMMUG00000023157
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNX18 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (52835337..52918606)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (55441646..55466698)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 15 Neighboring gene microRNA mir-581 Neighboring gene heat shock protein family B (small) member 3 Neighboring gene uncharacterized LOC106998768 Neighboring gene zinc finger protein 561 pseudogene Neighboring gene chondroitin sulfate proteoglycan family member 4B, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cleavage furrow formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plasma membrane tubulation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261750.1 → NP_001248679.1  sorting nexin-18

      See identical proteins and their annotated locations for NP_001248679.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046080
      UniProtKB/TrEMBL
      H9EQZ7, I2CUY2
      Related
      ENSMMUP00000079787.1, ENSMMUT00000081776.1
      Conserved Domains (5) summary
      cd07286
      Location:276 → 403
      PX_SNX18; The phosphoinositide binding Phox Homology domain of Sorting Nexin 18
      cd07670
      Location:415 → 621
      BAR_SNX18; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18
      cd11897
      Location:4 → 58
      SH3_SNX18; Src Homology 3 domain of Sorting nexin 18
      cl25932
      Location:61 → 137
      Peptidase_S21; Assemblin (Peptidase family S21)
      cl26464
      Location:64 → 222
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      52835337..52918606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849191.1 → XP_028705024.1  sorting nexin-18 isoform X1

      UniProtKB/TrEMBL
      H9EQZ7
      Related
      ENSMMUP00000001914.4, ENSMMUT00000002028.4
      Conserved Domains (5) summary
      cd07286
      Location:276 → 403
      PX_SNX18; The phosphoinositide binding Phox Homology domain of Sorting Nexin 18
      cd11897
      Location:4 → 58
      SH3_SNX18; Src Homology 3 domain of Sorting nexin 18
      PHA03247
      Location:64 → 222
      PHA03247; large tegument protein UL36; Provisional
      cl25932
      Location:61 → 137
      Peptidase_S21; Assemblin (Peptidase family S21)
      cl12013
      Location:415 → 593
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    2. XM_028849193.1 → XP_028705026.1  sorting nexin-18 isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZC94
      Conserved Domains (5) summary
      cd07286
      Location:276 → 403
      PX_SNX18; The phosphoinositide binding Phox Homology domain of Sorting Nexin 18
      cd11897
      Location:4 → 58
      SH3_SNX18; Src Homology 3 domain of Sorting nexin 18
      PHA03247
      Location:60 → 222
      PHA03247; large tegument protein UL36; Provisional
      cl25932
      Location:61 → 137
      Peptidase_S21; Assemblin (Peptidase family S21)
      cl12013
      Location:415 → 541
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_028849192.1 → XP_028705025.1  sorting nexin-18 isoform X2

      UniProtKB/TrEMBL
      H9EQZ7
      Related
      ENSMMUP00000043614.2, ENSMMUT00000069662.2
      Conserved Domains (5) summary
      cd07286
      Location:276 → 403
      PX_SNX18; The phosphoinositide binding Phox Homology domain of Sorting Nexin 18
      cd11897
      Location:4 → 58
      SH3_SNX18; Src Homology 3 domain of Sorting nexin 18
      PHA03247
      Location:64 → 222
      PHA03247; large tegument protein UL36; Provisional
      cl25932
      Location:61 → 137
      Peptidase_S21; Assemblin (Peptidase family S21)
      cl12013
      Location:415 → 588
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    Nucleotide Protein
    Heading Accession and Version

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