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    Nkain3 Sodium/potassium transporting ATPase interacting 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689576, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Nkain3provided by RGD
    Official Full Name
    Sodium/potassium transporting ATPase interacting 3provided by RGD
    Primary source
    RGD:1591051
    See related
    EnsemblRapid:ENSRNOG00000013085 AllianceGenome:RGD:1591051
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in regulation of sodium ion transport. Predicted to be located in membrane. Orthologous to human NKAIN3 (sodium/potassium transporting ATPase interacting 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 74.9), Brain (RPKM 22.0) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nkain3 in Genome Data Viewer
    Location:
    5q13-q21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (38410576..39106910, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (33613720..34310090, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (34133596..34813668, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene gamma-glutamyl hydrolase Neighboring gene histone deacetylase 1, pseudogene 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene caspase 3, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel family of transmembrane proteins interacting with beta subunits of the Na,K-ATPase. Gorokhova S, et al. Hum Mol Genet, 2007 Oct 15. PMID 17606467
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in regulation of sodium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3
    Names
    Na+/K+ transporting ATPase interacting 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109540.2 → NP_001103010.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6IID7, F1LV86
      Related
      ENSRNOP00000017479.7, ENSRNOT00000017479.8
      Conserved Domains (1) summary
      pfam05640
      Location:10 → 177
      NKAIN; Na,K-Atpase Interacting protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      38410576..39106910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110792.2 → XP_038966720.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3 isoform X1

      Related
      ENSRNOP00000099730.1, ENSRNOT00000166915.1

    2. XM_063288441.1 → XP_063144511.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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