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    LOC5509060 thioredoxin-like protein 4B [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5509060, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5509060
    Gene description
    thioredoxin-like protein 4B
    Locus tag
    NEMVEDRAFT_v1g189222
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5509060 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (18364394..18366874)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834276.1 (237008..240288)

    Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene outer dense fiber protein 3 Neighboring gene equilibrative nucleoside transporter 1 Neighboring gene uncharacterized LOC125559908 Neighboring gene uncharacterized LOC116616097 Neighboring gene cholinesterase 1 Neighboring gene cholecystokinin receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like protein 4B
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064035.1 Reference jaNemVect1.1

      Range
      18364394..18366874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001629560.3 → XP_001629610.1  thioredoxin-like protein 4B

      See identical proteins and their annotated locations for XP_001629610.1

      UniProtKB/TrEMBL
      A7SFF2
      Conserved Domains (1) summary
      pfam02966
      Location:4 → 136
      DIM1; Mitosis protein DIM1
    Nucleotide Protein
    Heading Accession and Version

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