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    LOC127086377 protochlorophyllide reductase, chloroplastic [ Pisum sativum (garden pea) ]

    Gene ID: 127086377, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC127086377
    Gene description
    protochlorophyllide reductase, chloroplastic
    Locus tag
    KIW84_056875
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pisum sativum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
    Also known as
    POR; pcr; 3PCR
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    Genomic context

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    See LOC127086377 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 5 NC_066583.1 (557272045..557274294, complement)

    Chromosome 5 - NC_066583.1Genomic Context describing neighboring genes Neighboring gene stem-specific protein TSJT1 Neighboring gene lanC-like protein GCR2 Neighboring gene uncharacterized LOC127086378 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066583.1 Chromosome 5 Reference CAAS_Psat_ZW6_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers. Kaur S, et al. BMC Genomics, 2012 Mar 20. PMID 22433453, Free PMC Article
    2. Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. Duarte J, et al. BMC Genomics, 2014 Feb 12. PMID 24521263, Free PMC Article
    3. De novo assembly and characterisation of the field pea transcriptome using RNA-Seq. Sudheesh S, et al. BMC Genomics, 2015 Aug 16. PMID 26275991, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protochlorophyllide reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protochlorophyllide reductase, chloroplastic
    Names
    NADPH-protochlorophyllide oxidoreductase
    XP_050883094.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426913.1 → NP_001413842.1  protochlorophyllide reductase, chloroplastic

      Status: PROVISIONAL

      Source sequence(s)
      GCMK01004893, GEZC01016032, JR954540
      UniProtKB/Swiss-Prot
      Q01289
      UniProtKB/TrEMBL
      A0A9D4WZH5

    RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Psat_ZW6_1.0

    Genomic

    1. NC_066583.1 Reference CAAS_Psat_ZW6_1.0

      Range
      557272045..557274294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051027137.1 → XP_050883094.1  protochlorophyllide reductase, chloroplastic

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01289.1 GenPept UniProtKB/Swiss-Prot:Q01289

    Gene LinkOut

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