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    LOC117876480 cytosolic phospholipase A2 epsilon-like [ Trachemys scripta elegans ]

    Gene ID: 117876480, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117876480
    Gene description
    cytosolic phospholipase A2 epsilon-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trachemys scripta elegans (sub-species: elegans)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
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    Genomic context

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    See LOC117876480 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current CAS_Tse_1.0 (GCF_013100865.1) 4 NC_048301.1 (62297412..62344358, complement)

    Chromosome 4 - NC_048301.1Genomic Context describing neighboring genes Neighboring gene cytosolic phospholipase A2 epsilon-like Neighboring gene cytosolic phospholipase A2 epsilon-like Neighboring gene cytosolic phospholipase A2 epsilon-like Neighboring gene cytosolic phospholipase A2 delta-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048301.1 Chromosome 4 Reference CAS_Tse_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic phospholipase A2 epsilon-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAS_Tse_1.0 Primary Assembly

    Genomic

    1. NC_048301.1 Reference CAS_Tse_1.0 Primary Assembly

      Range
      62297412..62344358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034768733.1 → XP_034624624.1  cytosolic phospholipase A2 epsilon-like

    Nucleotide Protein
    Heading Accession and Version

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