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    LOC116863094 E3 ubiquitin-protein ligase RING1-like [ Lontra canadensis (Northern American river otter) ]

    Gene ID: 116863094, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC116863094
    Gene description
    E3 ubiquitin-protein ligase RING1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lontra canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
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    Genomic context

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    See LOC116863094 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631510.1 (43119..47404)

    NW_022631510.1Genomic Context describing neighboring genes Neighboring gene zinc transporter SLC39A7 Neighboring gene estradiol 17-beta-dehydrogenase 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022631510 Unplaced Scaffold Reference GSC_riverotter_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PcG protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RING1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_riverotter_1.0

    Genomic

    1. NW_022631510.1 Reference GSC_riverotter_1.0

      Range
      43119..47404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032850596.1 → XP_032706487.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RING1-like

      Conserved Domains (2) summary
      cd16739
      Location:47 → 90
      RING-HC_RING1; RING finger, HC subclass, found in really interesting new gene 1 protein (RING1) and similar proteins
      cd17166
      Location:261 → 400
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)
    Nucleotide Protein
    Heading Accession and Version

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