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Links from Protein Clusters

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    BPC5 basic pentacysteine 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830046, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPC5
    Official Full Name
    basic pentacysteine 5
    Primary source
    TAIR:AT4G38910
    Locus tag
    AT4G38910
    See related
    Araport:AT4G38910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPC5; basic pentacysteine 5; BBR/BPC5; F19H22.10; F19H22_10
    Summary
    Encodes a basic pentacysteine protein that is localized to the nucleus and specifically binds in vitro to GA dinucleotide repeats.
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    Genomic context

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    See BPC5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18145188..18147080, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene uncharacterized protein Neighboring gene vacuolar-type H[+]-ATPase C3 Neighboring gene Ubiquitin fusion degradation UFD1 family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Meister RJ, et al. Plant J, 2004 Feb. PMID 14731261
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001204028.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    basic pentacysteine 5
    NP_001190957.1
    • basic pentacysteine 5 (BPC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2).
    NP_195602.5
    • basic pentacysteine 5 (BPC5); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2); Has 238 Blast hits to 238 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18145188..18147080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120051.6 → NP_195602.5  basic pentacysteine 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195602.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UVL3
      Conserved Domains (1) summary
      pfam06217
      Location:6 → 258
      GAGA_bind; GAGA binding protein-like family

    2. NM_001204028.2 → NP_001190957.1  basic pentacysteine 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190957.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E6Y2M5, E6Y2M6, F4JUI3, F4JUI4, Q9SVK1
      UniProtKB/TrEMBL
      A0A178UV75, A0A654FWX4
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 283
      GAGA_bind; GAGA binding protein-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JUI3.1

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