U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein Clusters

    • Showing Current items.

    Ribosomal protein S21 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836450, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ribosomal protein S21 family protein
    Primary source
    TAIR:AT5G63300
    Locus tag
    AT5G63300
    See related
    Araport:AT5G63300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDC12.27; MDC12_27
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (25371091..25372017)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene Radical SAM superfamily protein Neighboring gene ncRNA Neighboring gene nucleoside diphosphate kinase 2 Neighboring gene ncRNA Neighboring gene nuclear protein X1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001126011.2
    NM_125725.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ribosomal protein S21 family protein
    NP_001119483.1
    • Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_201135.2
    • Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 1443 Blast hits to 1443 proteins in 604 species: Archae - 0; Bacteria - 1229; Metazoa - 17; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25371091..25372017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125725.4 → NP_201135.2  Ribosomal protein S21 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201135.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GDY9, Q500W1, Q683J1
      Conserved Domains (1) summary
      PRK00270
      Location:82 → 140
      rpsU; 30S ribosomal protein S21; Reviewed

    2. NM_001126011.2 → NP_001119483.1  Ribosomal protein S21 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119483.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGS8, Q9FMJ3
      Conserved Domains (1) summary
      PRK00270
      Location:82 → 139
      rpsU; 30S ribosomal protein S21; Reviewed
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools