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    HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818579, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HAD superfamily, subfamily IIIB acid phosphatase
    Primary source
    TAIR:AT2G39920
    Locus tag
    AT2G39920
    See related
    Araport:AT2G39920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.8; T28M21_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16663017..16664539, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline transporter 1 Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene ARM repeat superfamily protein Neighboring gene isoamylase 1 Neighboring gene ncRNA Neighboring gene RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202787.1
    NM_001202788.1
    NM_001336806.1
    NM_129550.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    HAD superfamily, subfamily IIIB acid phosphatase
    NP_001189716.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1).
    NP_001189717.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1).
    NP_565918.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 356 Blast hits to 355 proteins in 40 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16663017..16664539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202788.1 → NP_001189717.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189717.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001202787.1 → NP_001189716.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUL9, F4IG20
      Conserved Domains (1) summary
      cd07535
      Location:114 → 275
      HAD_VSP; vegetative storage proteins similar to soybean VSPalpha and VSPbeta proteins; belongs to the haloacid dehalogenase-like superfamily

    3. NM_129550.4 → NP_565918.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565918.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    4. NM_001336806.1 → NP_001323609.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04195
      UniProtKB/TrEMBL
      A0A5S9X5J4, A0A654F0E7
      Conserved Domains (1) summary
      cl21460
      Location:114 → 276
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04195.2

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