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Links from Protein Clusters

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    signal transducer, putative (DUF3550/UPF0682) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821234, updated on 18-Sep-2024

    Summary

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    Official Full Name
    signal transducer, putative (DUF3550/UPF0682)
    Primary source
    TAIR:AT3G03570
    Locus tag
    AT3G03570
    See related
    Araport:AT3G03570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J13.15; T12J13_15
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (856876..860469)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111228.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    signal transducer, putative (DUF3550/UPF0682)
    NP_566209.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3550/UPF0682) (TAIR:AT4G40050.1); Has 215 Blast hits to 210 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      856876..860469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111228.3 → NP_566209.1  signal transducer, putative (DUF3550/UPF0682) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566209.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMH0, A0A384KG57, F4J153, Q8LEN3
      Conserved Domains (1) summary
      pfam12070
      Location:19 → 552
      SCAI; Protein SCAI
    Nucleotide Protein
    Heading Accession and Version

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